Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1056
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.34 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.34 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.59 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 295 HHSIKRERAQRGICSLVSSTPNKFTGFAN 381
           H+ + +E  ++G+C++  S+ N    FAN
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTVTFAN 142


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 295 HHSIKRERAQRGICSLVSSTPNKFTGFAN 381
           H+ + +E  ++G+C++  S+ N    FAN
Sbjct: 114 HNLVGKEACKQGVCTVEVSSENMTVTFAN 142


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 211 AAISSDGMTMSTIMLGSWWGGSFVSLPMPSREESFPTALTTVSVFPRHVSLKLR 50
           A    D +T + + LG       V + +P  ++  P  LTTV    +  S KLR
Sbjct: 176 AIFDGDFITENNLPLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLR 229


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
 Frame = +2

Query: 131 RQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDLEDEFN-TIPL 307
           R RN+       Q++  H            RKR  R+     R  KN++   ++  T   
Sbjct: 239 RDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETSKE 298

Query: 308 NGNVHSAGYAV*SPAHQISLRDSQI---NDNKKKYLHYIA*NKIAFSVPIPL 454
                        P    SL ++ I   N NKK Y + I   +I   VP+P+
Sbjct: 299 RSRDRIERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPVPI 350


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
 Frame = +2

Query: 101 RRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDL 280
           R++R +   H ++ K     RT    R+      +      +R +R +   ++ R  D  
Sbjct: 13  RKDRRYEKLHNEKEKLLEE-RTNR-KRNSRSREREQNSYKNEREYRKYRETSKERSRDRT 70

Query: 281 EDEFNTIPL------NGNVHSAGYAV*SPAHQISLRDSQINDNKKKYLHYIA*NKIAFSV 442
           E E +  P       N  +H+  Y      +  +   +  N NKK Y + I   +I   V
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKY----NYNNNNYNNNNYNKKLYYNIINIEQIPVPV 126

Query: 443 PIPL 454
           P+P+
Sbjct: 127 PVPV 130


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
 Frame = +2

Query: 101 RRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRXRKNDDL 280
           R++R +   H ++ K     RT    R+      +      +R +R +   ++ R  D  
Sbjct: 13  RKDRRYEKLHNEKEKLLEE-RTNR-KRNSRSREREQNSYKNEREYRKYRETSKERSRDRA 70

Query: 281 EDEFNTIPL------NGNVHSAGYAV*SPAHQISLRDSQINDNKKKYLHYIA*NKIAFSV 442
           E E +  P       N  +H+  Y      +  +   +  N NKK Y + I   +I   V
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKY----NYNNNNYNNNNYNKKLYYNIINIEQIPVPV 126

Query: 443 PIPL 454
           P+P+
Sbjct: 127 PVPV 130


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 69  CLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIP 194
           C GK + +V   G   +  GIG++ K      PN+ +  V P
Sbjct: 203 CEGKIDYLVAGAGTGGTISGIGRKLK---ELSPNIKIIAVDP 241


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 118 EESFPTALTTVSVFPRHVSLKLRR 47
           E+S       +SV P HV++K+R+
Sbjct: 228 EQSTEQERLLLSVLPEHVAVKMRQ 251


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +2

Query: 170 HDSRHRHPVAADSGPVHRKRVHRTHHL 250
           H     H +    GP H    H+T  L
Sbjct: 335 HHQHGNHTMGPTMGPPHHHHHHQTQSL 361


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 359 ISLRDSQINDNKKKYLHYIA*NKIAFSVPIPL 454
           IS  ++  N NKK Y +     +I   VP+P+
Sbjct: 93  ISNYNNNNNYNKKLYYNINYIEQIPVPVPVPI 124


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 359 ISLRDSQINDNKKKYLHYIA*NKIAFSVPIPL 454
           IS  ++  N NKK Y +     +I   VP+P+
Sbjct: 93  ISNYNNDNNYNKKLYYNINYIEQIPVPVPVPI 124


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 359 ISLRDSQINDNKKKYLHYIA*NKIAFSVPIPL 454
           IS  ++  N NKK Y +     +I   VP+P+
Sbjct: 331 ISNYNNNNNYNKKLYYNINYIEQIPVPVPVPI 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,300
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)