Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1055
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.11 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.0  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   3.2  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 507 LCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY*SIHFL*GCFYTFCIFAF 349
           LC  YF+    LF+ H   +  ++   Y   LF    I F     +  CI+ F
Sbjct: 236 LCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF 288


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 569 FFFFGSHIINYSTTAS 522
           F FFG+HI++Y   AS
Sbjct: 374 FGFFGTHILSYINKAS 389


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +1

Query: 7   QFYLL*EKKCKKFIENSNEQVERNQRLSNNFLKFSLNPRIKSY 135
           + YLL    C    E +N+       L NN+    L   ++SY
Sbjct: 302 EIYLL-VYACASTCEQANDTPSILHELRNNYFHMDLENNVQSY 343


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 360 IFAFLPLGVF*GHSFWLYLLQDSRNMK 280
           + A L LG F G + +L +L+  RN++
Sbjct: 88  LMAVLFLGTFIGRAKFLAILKQMRNLE 114


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 64   QVERNQRLSNNFLKFSLNP 120
            QV  N +L  NF+   L+P
Sbjct: 1538 QVSNNVKLGQNFVLLDLDP 1556


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 568 FFFLVHISLIIQQRLLLFNPTLW 500
           F F+V +S+      L+ NP +W
Sbjct: 245 FIFIV-VSIFYMSAYLISNPIMW 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,103
Number of Sequences: 336
Number of extensions: 3563
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)