Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1055
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 54 1e-08
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 31 0.12
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.48
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 1.5
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 27 2.6
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 3.4
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 26 3.4
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.5
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 5.9
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 5.9
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 7.8
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +3
Query: 276 LSSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKI----RNHNKLKRIE 443
LS +Y + ++++K+V++IHP++KR ICK C S+L+ S +++ R + + R+
Sbjct: 31 LSRHYISTAKDVSQKSVMRIHPDIKRTICKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
Query: 444 WKCNICGERK 473
W C C +K
Sbjct: 91 WICKKCAFKK 100
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 497 FIFFSWQTFSLATDVTFPFYSL*FIVISYFHISRYIFYEDASTLFAYLPFYLWVYF 330
F+F S ++L D T S+ +SY H+ ++ A F YL YLW F
Sbjct: 272 FLFSSKNKYTLQNDPTTLSISIPIADLSYKHVVEWVTNGVAIFSFFYLLLYLWKRF 327
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 29.1 bits (62), Expect = 0.48
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 522 FFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCD 418
FF +CG+ +L H CY + +I CD
Sbjct: 321 FFREDICGILLEWFDDLLESHVCYFADYLQIIVCD 355
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 49 ENSNEQVERNQRLSNNFLKFSLNPRIKSY--GNKNRKQHNCITFK*NKMRQKIQGNDAFQ 222
EN N Q + ++N + P +++ N+N HN K++ ++GN A++
Sbjct: 346 ENINNQFQEASVTADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAYE 405
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 28 KKCKKFIENSNEQVERNQRLSNNFLKFSLNPRIKS 132
K+ F + S+ + R+ + N+FL+ LNP++++
Sbjct: 205 KRTTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQA 239
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 333 IHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHRV 509
+ P+ ++ICK+C + E N+ I N K + GER G+ A KD V
Sbjct: 17 VRPKTGQKICKECFYYVFETEIHNVIIEN---------KLFVRGERVGIGASGGKDSTV 66
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 7 QFYLL*EKKCKKFIENSNEQVERNQRLSNNFLKFSLN 117
QFY E++CK + +Q+E + L + KF N
Sbjct: 438 QFYATREERCKNQLREYEKQMEYRKHLQSFIDKFRYN 474
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 3.4
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Frame = +3
Query: 252 SMASKNTILSSYYGNLVVN---IAKKNVLKIHPEVKRQICKKCRSI-LIEN----VSTNM 407
S + ++ SS G VVN I +K I+ E ++ + ++ + L+E VSTN
Sbjct: 35 SESDEDDEFSSTSGKKVVNVFEILEKENNAINSEAEKSVSEEEQDEPLVEGESPIVSTNK 94
Query: 408 KIRNHNKLKRIEWKCNICGER 470
K +N K K+ + K + G+R
Sbjct: 95 KAKNKKKKKKQQKKKKVTGKR 115
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 540 LFNNGFFFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY 403
L N F FS+ LC L F++ L + + + L+Y + +++
Sbjct: 16 LLNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCLLYASYTWNF 61
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 497 FIFFSWQTFSLATDVTFPFYSL 432
F+FFS+ +F L + + FP +SL
Sbjct: 181 FLFFSFLSFPLLSFILFPCFSL 202
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 34 CKKFIENSNEQVERNQRLSNNFLKFSL 114
C++F E+ Q + + L NN LK+ +
Sbjct: 2363 CREFDEDLTSQAQDTEMLHNNLLKYGI 2389
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 294 NLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLK 434
NLV+ +A+K + K ++ RSI++ S K+ NK K
Sbjct: 695 NLVLALAEKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAK 741
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 351 RQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKD 500
R + ++ R L EN + N +KLKR+ W + L EK D
Sbjct: 377 RNLHQQSRKSLDENKPNSFS--NVSKLKRLPWNMRYLDLKSDLTVEKKSD 424
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 345 VKRQICKKC--RSILIENVSTNMKIRNHNKLKRIE-WKCNICGERKGLPAEKNKDHRVGL 515
V + C+KC + + N N + N ++ +E ++CN+CG + P N+ +
Sbjct: 100 VNQPPCEKCGGETHMTGNGPPNEE-EKWNGVRNVELYQCNVCGHNQRFP-RYNRIRALLD 157
Query: 516 KRRSRC 533
R+ RC
Sbjct: 158 SRKGRC 163
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 428 FIVISYFHISRYIFYEDASTLFAYLPFYLWVYFEDILFGYI 306
FI+ ++F +SRY Y A F + + W++ + G +
Sbjct: 202 FIISTFFCLSRYHVYHKAPFTFYW---FKWLFLTGVCIGCV 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,113
Number of Sequences: 5004
Number of extensions: 51920
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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