SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1055
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po...    54   1e-08
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          31   0.12 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.48 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    27   1.5  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    27   2.6  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   3.4  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   3.4  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   5.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   5.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   7.8  

>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 107

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
 Frame = +3

Query: 276 LSSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKI----RNHNKLKRIE 443
           LS +Y +   ++++K+V++IHP++KR ICK C S+L+   S +++     R +  + R+ 
Sbjct: 31  LSRHYISTAKDVSQKSVMRIHPDIKRTICKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90

Query: 444 WKCNICGERK 473
           W C  C  +K
Sbjct: 91  WICKKCAFKK 100


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 497 FIFFSWQTFSLATDVTFPFYSL*FIVISYFHISRYIFYEDASTLFAYLPFYLWVYF 330
           F+F S   ++L  D T    S+    +SY H+  ++    A   F YL  YLW  F
Sbjct: 272 FLFSSKNKYTLQNDPTTLSISIPIADLSYKHVVEWVTNGVAIFSFFYLLLYLWKRF 327


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 522 FFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCD 418
           FF   +CG+      +L   H CY +    +I CD
Sbjct: 321 FFREDICGILLEWFDDLLESHVCYFADYLQIIVCD 355


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 49  ENSNEQVERNQRLSNNFLKFSLNPRIKSY--GNKNRKQHNCITFK*NKMRQKIQGNDAFQ 222
           EN N Q +     ++N   +   P +++    N+N   HN       K++  ++GN A++
Sbjct: 346 ENINNQFQEASVTADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAYE 405


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 28  KKCKKFIENSNEQVERNQRLSNNFLKFSLNPRIKS 132
           K+   F + S+  + R+  + N+FL+  LNP++++
Sbjct: 205 KRTTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQA 239


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 333 IHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHRV 509
           + P+  ++ICK+C   + E    N+ I N         K  + GER G+ A   KD  V
Sbjct: 17  VRPKTGQKICKECFYYVFETEIHNVIIEN---------KLFVRGERVGIGASGGKDSTV 66


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   QFYLL*EKKCKKFIENSNEQVERNQRLSNNFLKFSLN 117
           QFY   E++CK  +    +Q+E  + L +   KF  N
Sbjct: 438 QFYATREERCKNQLREYEKQMEYRKHLQSFIDKFRYN 474


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
 Frame = +3

Query: 252 SMASKNTILSSYYGNLVVN---IAKKNVLKIHPEVKRQICKKCRSI-LIEN----VSTNM 407
           S + ++   SS  G  VVN   I +K    I+ E ++ + ++ +   L+E     VSTN 
Sbjct: 35  SESDEDDEFSSTSGKKVVNVFEILEKENNAINSEAEKSVSEEEQDEPLVEGESPIVSTNK 94

Query: 408 KIRNHNKLKRIEWKCNICGER 470
           K +N  K K+ + K  + G+R
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKR 115


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 540 LFNNGFFFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY 403
           L N  F FS+ LC L F++   L   +    +  + L+Y  + +++
Sbjct: 16  LLNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCLLYASYTWNF 61


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 497 FIFFSWQTFSLATDVTFPFYSL 432
           F+FFS+ +F L + + FP +SL
Sbjct: 181 FLFFSFLSFPLLSFILFPCFSL 202


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 34   CKKFIENSNEQVERNQRLSNNFLKFSL 114
            C++F E+   Q +  + L NN LK+ +
Sbjct: 2363 CREFDEDLTSQAQDTEMLHNNLLKYGI 2389


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 294 NLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLK 434
           NLV+ +A+K   +     K ++    RSI++   S   K+   NK K
Sbjct: 695 NLVLALAEKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAK 741


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 351 RQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKD 500
           R + ++ R  L EN   +    N +KLKR+ W       +  L  EK  D
Sbjct: 377 RNLHQQSRKSLDENKPNSFS--NVSKLKRLPWNMRYLDLKSDLTVEKKSD 424


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 345 VKRQICKKC--RSILIENVSTNMKIRNHNKLKRIE-WKCNICGERKGLPAEKNKDHRVGL 515
           V +  C+KC   + +  N   N +    N ++ +E ++CN+CG  +  P   N+   +  
Sbjct: 100 VNQPPCEKCGGETHMTGNGPPNEE-EKWNGVRNVELYQCNVCGHNQRFP-RYNRIRALLD 157

Query: 516 KRRSRC 533
            R+ RC
Sbjct: 158 SRKGRC 163


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 428 FIVISYFHISRYIFYEDASTLFAYLPFYLWVYFEDILFGYI 306
           FI+ ++F +SRY  Y  A   F +   + W++   +  G +
Sbjct: 202 FIISTFFCLSRYHVYHKAPFTFYW---FKWLFLTGVCIGCV 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,113
Number of Sequences: 5004
Number of extensions: 51920
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -