BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1055 (570 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 54 1e-08 SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 31 0.12 SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.48 SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 1.5 SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 27 2.6 SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.6 SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 3.4 SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 26 3.4 SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.5 SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.5 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.9 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 5.9 SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 5.9 SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 7.8 >SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 107 Score = 54.4 bits (125), Expect = 1e-08 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Frame = +3 Query: 276 LSSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKI----RNHNKLKRIE 443 LS +Y + ++++K+V++IHP++KR ICK C S+L+ S +++ R + + R+ Sbjct: 31 LSRHYISTAKDVSQKSVMRIHPDIKRTICKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90 Query: 444 WKCNICGERK 473 W C C +K Sbjct: 91 WICKKCAFKK 100 >SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual Length = 332 Score = 31.1 bits (67), Expect = 0.12 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -2 Query: 497 FIFFSWQTFSLATDVTFPFYSL*FIVISYFHISRYIFYEDASTLFAYLPFYLWVYF 330 F+F S ++L D T S+ +SY H+ ++ A F YL YLW F Sbjct: 272 FLFSSKNKYTLQNDPTTLSISIPIADLSYKHVVEWVTNGVAIFSFFYLLLYLWKRF 327 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 29.1 bits (62), Expect = 0.48 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = -1 Query: 522 FFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCD 418 FF +CG+ +L H CY + +I CD Sbjct: 321 FFREDICGILLEWFDDLLESHVCYFADYLQIIVCD 355 >SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 661 Score = 27.5 bits (58), Expect = 1.5 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +1 Query: 49 ENSNEQVERNQRLSNNFLKFSLNPRIKSY--GNKNRKQHNCITFK*NKMRQKIQGNDAFQ 222 EN N Q + ++N + P +++ N+N HN K++ ++GN A++ Sbjct: 346 ENINNQFQEASVTADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAYE 405 >SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces pombe|chr 3|||Manual Length = 408 Score = 26.6 bits (56), Expect = 2.6 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = +1 Query: 28 KKCKKFIENSNEQVERNQRLSNNFLKFSLNPRIKS 132 K+ F + S+ + R+ + N+FL+ LNP++++ Sbjct: 205 KRTTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQA 239 >SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 26.6 bits (56), Expect = 2.6 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +3 Query: 333 IHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHRV 509 + P+ ++ICK+C + E N+ I N K + GER G+ A KD V Sbjct: 17 VRPKTGQKICKECFYYVFETEIHNVIIEN---------KLFVRGERVGIGASGGKDSTV 66 >SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 26.2 bits (55), Expect = 3.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 7 QFYLL*EKKCKKFIENSNEQVERNQRLSNNFLKFSLN 117 QFY E++CK + +Q+E + L + KF N Sbjct: 438 QFYATREERCKNQLREYEKQMEYRKHLQSFIDKFRYN 474 >SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 667 Score = 26.2 bits (55), Expect = 3.4 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Frame = +3 Query: 252 SMASKNTILSSYYGNLVVN---IAKKNVLKIHPEVKRQICKKCRSI-LIEN----VSTNM 407 S + ++ SS G VVN I +K I+ E ++ + ++ + L+E VSTN Sbjct: 35 SESDEDDEFSSTSGKKVVNVFEILEKENNAINSEAEKSVSEEEQDEPLVEGESPIVSTNK 94 Query: 408 KIRNHNKLKRIEWKCNICGER 470 K +N K K+ + K + G+R Sbjct: 95 KAKNKKKKKKQQKKKKVTGKR 115 >SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 133 Score = 25.8 bits (54), Expect = 4.5 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = -1 Query: 540 LFNNGFFFSTXLCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY 403 L N F FS+ LC L F++ L + + + L+Y + +++ Sbjct: 16 LLNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCLLYASYTWNF 61 >SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 25.8 bits (54), Expect = 4.5 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 497 FIFFSWQTFSLATDVTFPFYSL 432 F+FFS+ +F L + + FP +SL Sbjct: 181 FLFFSFLSFPLLSFILFPCFSL 202 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.8 bits (54), Expect = 4.5 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = +1 Query: 34 CKKFIENSNEQVERNQRLSNNFLKFSL 114 C++F E+ Q + + L NN LK+ + Sbjct: 2363 CREFDEDLTSQAQDTEMLHNNLLKYGI 2389 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 25.4 bits (53), Expect = 5.9 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +3 Query: 294 NLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLK 434 NLV+ +A+K + K ++ RSI++ S K+ NK K Sbjct: 695 NLVLALAEKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAK 741 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.4 bits (53), Expect = 5.9 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +3 Query: 351 RQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKD 500 R + ++ R L EN + N +KLKR+ W + L EK D Sbjct: 377 RNLHQQSRKSLDENKPNSFS--NVSKLKRLPWNMRYLDLKSDLTVEKKSD 424 >SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr 2|||Manual Length = 333 Score = 25.4 bits (53), Expect = 5.9 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +3 Query: 345 VKRQICKKC--RSILIENVSTNMKIRNHNKLKRIE-WKCNICGERKGLPAEKNKDHRVGL 515 V + C+KC + + N N + N ++ +E ++CN+CG + P N+ + Sbjct: 100 VNQPPCEKCGGETHMTGNGPPNEE-EKWNGVRNVELYQCNVCGHNQRFP-RYNRIRALLD 157 Query: 516 KRRSRC 533 R+ RC Sbjct: 158 SRKGRC 163 >SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizosaccharomyces pombe|chr 1|||Manual Length = 739 Score = 25.0 bits (52), Expect = 7.8 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -2 Query: 428 FIVISYFHISRYIFYEDASTLFAYLPFYLWVYFEDILFGYI 306 FI+ ++F +SRY Y A F + + W++ + G + Sbjct: 202 FIISTFFCLSRYHVYHKAPFTFYW---FKWLFLTGVCIGCV 239 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,386,113 Number of Sequences: 5004 Number of extensions: 51920 Number of successful extensions: 170 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 170 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -