Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1055
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.041
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.0
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31) 29 2.0
SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2) 29 2.0
SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.0
SB_51850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 29 3.5
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 29 3.5
SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62) 29 3.5
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.7
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42) 28 6.2
SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0) 27 8.2
SB_28163| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 8.2
>SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 36.7 bits (81), Expect = 0.013
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 306 NIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPA 485
N + K L+IH K C +C N S +R H+ K +KC+ICG + L +
Sbjct: 81 NYSLKEHLRIHSGEKPLKCYECGKCFSHNSSLVEHLRVHSGEK--PYKCDICGRKFSLSS 138
Query: 486 EKNKDHRVGLKRRS-RC 533
++K R+ + RC
Sbjct: 139 NRDKHFRLHTNEKPFRC 155
>SB_3590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 312 AKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGE 467
A K L+IH K C +C I+N N+ +R H+ K +KC+ CG+
Sbjct: 316 ALKRHLRIHSGRKPYKCDECGKCFIQNADLNIHLRIHSGQK--PYKCDECGK 365
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +2
Query: 35 VKNLLKIPTNKSNEIKD*VIIFLNFH*IHG*NRMVIRTENNIIVLLLNKIKCDKKYRETM 214
+K L++ + K NE+KD V FLN G + + E N + + KC +K +
Sbjct: 126 LKQLIEFVSTKENEVKDFVTNFLNKE--KGDKSAIGQDEQNNVYWYFDGRKCKRKRKRNT 183
Query: 215 LFNESIIYIK*VKHGFQEHNTIFILRESCSKYSQKEC 325
N S I ++ + +LR CS+ + C
Sbjct: 184 SVNRSNI-----SASARKSRSCILLRLCCSENRKTMC 215
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 333 IHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGER 470
IH E KR C+KC + S ++H+ +K ++ CNIC ++
Sbjct: 756 IHEEEKRFSCEKCGKKFAQVASYCRHRKSHDGIK--DYLCNICNKK 799
>SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 315 KKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGER 470
KK+ L +H K CK+C + ++ + +R H +K + C ICG R
Sbjct: 317 KKHTL-MHTGAKPFQCKQCGKVFSQSSNMLTHMRRHTGIK--PFPCKICGRR 365
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 312 AKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGE 467
A K L IH E K C KC E+ + + H++ K +KC+ CG+
Sbjct: 593 ALKRHLSIHTEQKPYKCDKCGKGFSESGALKRHVIIHSRRK--PYKCDECGK 642
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 330 KIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHR 506
+IH K CK C + S M R+H+ K +KC ICG + + + + R
Sbjct: 285 RIHTNEKPYKCKLCPKAFTSHSSLVMHNRHHSGDK--PYKCEICGRAFSVSSNRARHMR 341
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 330 KIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNIC 461
KIH E K C +C I + R H+ K ++C IC
Sbjct: 509 KIHTEEKPHECTQCEKAFITKAKLDRHFRTHSGEK--PYRCEIC 550
>SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)
Length = 239
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 379 MLLHFLHICLFTSGCILRTFFLA-IFTTRFP*YEDSIVFLEAMLYLFDI 236
M+ LH+C+F G IL F LA F R+ +++L A+ +F +
Sbjct: 1 MVSGLLHLCVFAVGIILNLFLLARCFCKRWSSVPSPMMYLIAVQGIFSV 49
>SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
Length = 310
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 379 MLLHFLHICLFTSGCILRTFFLA-IFTTRFP*YEDSIVFLEAMLYLFDI 236
M+ LH+C+F G IL F LA F R+ +++L A+ +F +
Sbjct: 1 MVSGLLHLCVFAVGIILNLFLLARCFCKRWSSVPSPMMYLIAVQGIFSV 49
>SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 322
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 312 AKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGE 467
A K L IH E K C KC E+ + + H++ K +KC+ CG+
Sbjct: 138 ALKRHLSIHTEQKPYKCDKCGKGFSESGALKRHVIIHSRRK--PYKCDECGK 187
>SB_51850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 372 RSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHRVGLKRR 524
R+ ++ N +K H + KRI+ KC + +R E+N +H GL R
Sbjct: 22 RANMLYNTLARIKGVQHKEKKRIKKKCPLAWDRT-RSEEQNGNHTYGLPNR 71
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 506 SVVFIFFSWQTFSLATDVTFPFYSL*FIVISYFHISRYIFYED-ASTLFAYLPFYLWVYF 330
SVVF F + F L V F F FI I +F ++F +FA+ F ++V+F
Sbjct: 682 SVVFAFVVYPYFFLF--VVFAFVV--FIFIFFFAFVIFVFNAFFVFVVFAFFVFLVFVFF 737
Query: 329 EDILFGYIYYKIPV 288
++F + + + V
Sbjct: 738 VSVVFVFFVFVVYV 751
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 453 YISILFSLIYCDFLFSY*SIHFL*GCFYTFCIFAFLPLGVF 331
++ ++F+ + F+F + + F+ F+ F +FAF VF
Sbjct: 694 FLFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVFAFFVFLVF 734
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 327 LKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGER 470
L++H K C C+ ++ + +R H+K K +KC+IC R
Sbjct: 390 LRVHTGKKPFRCPTCQKSFSQDANLKAHLRVHSKEK--PFKCHICHRR 435
>SB_5624| Best HMM Match : LEA_4 (HMM E-Value=0.62)
Length = 372
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 40 KFIENSNEQVERNQRLSNNFLKF 108
KFI+N E +ERN+ + N KF
Sbjct: 66 KFIQNIKEGIERNKEMQENIKKF 88
>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 336
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 303 VNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGE 467
+N KN LK E C +C I + ++ ++ + + + CNICG+
Sbjct: 149 INKTSKNKLKEKSEKAIHRCDQCGKIFKTKYTLSIHLKMPDHTESRPFVCNICGK 203
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +3
Query: 318 KNVLKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGER 470
+N + IH K C KC N +N+K H + ++C C ++
Sbjct: 268 RNHIMIHTGEKPFQCTKCHRAF--NKMSNLKFHMHTHTDNLPYQCKTCRKK 316
>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
Length = 554
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 360 CKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLP 482
CK C I + + M IR H + KC+ICG+ P
Sbjct: 447 CKHCDKIYVSLGALKMHIRTHT----LPCKCSICGKAFSRP 483
>SB_20449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 354 QICKKCRSILIENVSTNMKIRNHNKLKRIEWKCN 455
Q C+KCR ++ N S +K+ + NK +EW N
Sbjct: 127 QQCEKCRKGILSNFSDQIKMIS-NKFVVVEWLNN 159
>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
Length = 582
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = -2
Query: 467 LATDVTFPFYSL*FIVISYFHISRYIFYEDA----STLFAYLPFYLWVYFEDI 321
++ V F F L F+VI+ F ++ + F + S +F Y+ F L+ Y +DI
Sbjct: 524 ISPHVKFGFLLLLFLVIALFLMAAFKFKLNKRLGLSFVFMYVLFVLYAYIQDI 576
>SB_28163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 327 LKIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNICGERKGLPAEKNKDHR 506
L+ H +V+ C+ C N N++ + +KC+ICG L + +N R
Sbjct: 38 LRTHSDVRMFTCQYCGKGF--NQKGNLQAHVYRHTGERPFKCHICGNSFTLASTRNTHLR 95
Query: 507 VGLKRR 524
K +
Sbjct: 96 THAKEK 101
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 379 MLLHFLHICLFTSGCILRTFFLAIFTTRFP*YEDSIVFLEAMLYLF 242
++L+ + LFT+ +L T L +FTT + + V A L +F
Sbjct: 874 LVLYTTALVLFTNAIVLFTAALVLFTTALVLFTNVFVLFTATLVIF 919
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,173
Number of Sequences: 59808
Number of extensions: 332287
Number of successful extensions: 1262
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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