BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1055 (570 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical ... 35 0.047 AF024503-3|AAG24098.3| 331|Caenorhabditis elegans Serpentine re... 31 0.44 Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical pr... 30 1.3 AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine r... 29 1.8 AL110479-28|CAJ76967.1| 213|Caenorhabditis elegans Hypothetical... 29 2.4 AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical... 29 2.4 AF125451-7|AAD12826.1| 136|Caenorhabditis elegans Hypothetical ... 29 3.1 AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical... 28 4.1 AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical ... 28 4.1 AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical ... 28 4.1 Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 28 5.4 Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 28 5.4 Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 28 5.4 Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 28 5.4 Z95559-5|CAB63362.2| 326|Caenorhabditis elegans Hypothetical pr... 27 9.5 U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 9.5 L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.5 L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.5 >AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical protein Y105C5B.4 protein. Length = 330 Score = 34.7 bits (76), Expect = 0.047 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -2 Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKIPV 288 Y+FY S LFA + P+ LW+ F D L Y+Y+K+ + Sbjct: 274 YLFYNALSDLFASINPYLLWI-FSDSLRKYVYWKMGI 309 >AF024503-3|AAG24098.3| 331|Caenorhabditis elegans Serpentine receptor, class j protein6 protein. Length = 331 Score = 31.5 bits (68), Expect = 0.44 Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 9/133 (6%) Frame = -1 Query: 540 LFNNGFFFSTXLCGLYFFQLANLFSRHRC-YISILFSLIYCDFLFSY*SI---HFL*GCF 373 + N G+ F+T + +F + AN RC +I+I ++L+ F++ Y + H + Sbjct: 66 VINTGYGFATFITDGFFTENANYAISSRCTFIAISYALLIIHFVYRYFILFHPHLVDKML 125 Query: 372 YTFCIFAFLPLGVF*GHSF-WL--YLLQDSRNMKIVLCSWKPCFTYLI*I-IDSLKSIVS 205 +FA + L G S+ WL + L + ++ ++ +P F + + D++ + Sbjct: 126 QPLGVFAMIALTAAHGASWTWLCDWCLAPNEEIRDIV---RPAFKEVHHVNSDNISLLTG 182 Query: 204 LY-FLSHFILFKS 169 Y S+F+++KS Sbjct: 183 QYRNASNFVVYKS 195 >Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical protein K09A9.1 protein. Length = 640 Score = 29.9 bits (64), Expect = 1.3 Identities = 20/71 (28%), Positives = 30/71 (42%) Frame = +3 Query: 237 ISNK*SMASKNTILSSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIR 416 I K M K + YY + KNVL ++ E+K C+ +IL E + + Sbjct: 462 ILKKQDMIVKMDLFEMYYNTYKDRLLPKNVLPMYEEMK--ACRNDSTILTEMAKRDFRSI 519 Query: 417 NHNKLKRIEWK 449 +RIE K Sbjct: 520 QEQMKRRIETK 530 >AC084197-28|AAO38573.1| 350|Caenorhabditis elegans Serpentine receptor, class v protein13 protein. Length = 350 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -2 Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294 Y+ Y S LFA + P+ LW+ F D L Y+ Y++ Sbjct: 269 YVLYNLLSDLFASINPYLLWI-FSDSLRKYVLYQV 302 >AL110479-28|CAJ76967.1| 213|Caenorhabditis elegans Hypothetical protein Y105C5B.6b protein. Length = 213 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = -2 Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294 Y+FY S L+A + P+ LW+ F D L +I+++I Sbjct: 161 YLFYNAISDLYAGINPYLLWI-FSDSLRKHIWHRI 194 >AL110479-27|CAB60322.2| 333|Caenorhabditis elegans Hypothetical protein Y105C5B.6a protein. Length = 333 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = -2 Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294 Y+FY S L+A + P+ LW+ F D L +I+++I Sbjct: 281 YLFYNAISDLYAGINPYLLWI-FSDSLRKHIWHRI 314 >AF125451-7|AAD12826.1| 136|Caenorhabditis elegans Hypothetical protein Y37E11B.6 protein. Length = 136 Score = 28.7 bits (61), Expect = 3.1 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +3 Query: 279 SSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENV-STNMKIRNHNKLKRIEWKCN 455 S + L + ++ + E K+Q CK CR +L+ N T + ++ + KC Sbjct: 52 SRHVSKLCRQVMDTEMVHLDCEQKQQFCKICREVLVGNYEKTEISVKQRGSVTE---KCG 108 Query: 456 ICGERK 473 C + + Sbjct: 109 NCHKER 114 >AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical protein Y57A10A.14 protein. Length = 204 Score = 28.3 bits (60), Expect = 4.1 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +3 Query: 324 VLKIHPEVKRQICKKCRS 377 +L I P+++R ICKKCR+ Sbjct: 181 LLFIPPQIRRPICKKCRT 198 >AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical protein K07B1.4b protein. Length = 339 Score = 28.3 bits (60), Expect = 4.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 373 LHFLHICLFTSGCILRTFFLAIFTTRFP*YEDSIVFLEAMLYLFDINN 230 LHF I LFT +L F ++T +P ++FL + ++D N+ Sbjct: 26 LHFFFITLFTPVLVLTVPFYMLYTVLWP-----LIFLYGLWMIYDWNS 68 >AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical protein K07B1.4a protein. Length = 349 Score = 28.3 bits (60), Expect = 4.1 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 373 LHFLHICLFTSGCILRTFFLAIFTTRFP*YEDSIVFLEAMLYLFDINN 230 LHF I LFT +L F ++T +P ++FL + ++D N+ Sbjct: 36 LHFFFITLFTPVLVLTVPFYMLYTVLWP-----LIFLYGLWMIYDWNS 78 >Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein C18D4.2b protein. Length = 1376 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 28 KKCKKFIENSNEQVERNQRLSNNF 99 +KCK I+NSN +NQ L+N F Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171 >Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein C18D4.2a protein. Length = 1817 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 28 KKCKKFIENSNEQVERNQRLSNNF 99 +KCK I+NSN +NQ L+N F Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171 >Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical protein C18D4.2b protein. Length = 1376 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 28 KKCKKFIENSNEQVERNQRLSNNF 99 +KCK I+NSN +NQ L+N F Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171 >Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein C18D4.2a protein. Length = 1817 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 28 KKCKKFIENSNEQVERNQRLSNNF 99 +KCK I+NSN +NQ L+N F Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171 >Z95559-5|CAB63362.2| 326|Caenorhabditis elegans Hypothetical protein Y41E3.12 protein. Length = 326 Score = 27.1 bits (57), Expect = 9.5 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -1 Query: 519 FSTXLCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY 403 F + L F + A+ + YISILF Y ++F + Sbjct: 129 FLNRVISLAFHEYADSIEKRLAYISILFCFSYAFYIFMF 167 >U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env protein precursor protein. Length = 2272 Score = 27.1 bits (57), Expect = 9.5 Identities = 8/33 (24%), Positives = 20/33 (60%) Frame = +3 Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491 +S+N++ +NH ++ ++ +C R PA++ Sbjct: 267 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 299 >L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1 protein, isoforma protein. Length = 2175 Score = 27.1 bits (57), Expect = 9.5 Identities = 8/33 (24%), Positives = 20/33 (60%) Frame = +3 Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491 +S+N++ +NH ++ ++ +C R PA++ Sbjct: 170 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 202 >L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1 protein, isoformb protein. Length = 2186 Score = 27.1 bits (57), Expect = 9.5 Identities = 8/33 (24%), Positives = 20/33 (60%) Frame = +3 Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491 +S+N++ +NH ++ ++ +C R PA++ Sbjct: 181 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 213 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,975,640 Number of Sequences: 27780 Number of extensions: 286717 Number of successful extensions: 943 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 915 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 943 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1187327456 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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