Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1055
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    35   0.047
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    31   0.44 
Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    29   1.8  
AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical...    29   2.4  
AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical...    29   2.4  
AF125451-7|AAD12826.1|  136|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical...    28   4.1  
AF003384-4|AAO21379.1|  339|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF003384-3|AAK71373.1|  349|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   9.5  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   9.5  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   9.5  

>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKIPV 288
           Y+FY   S LFA + P+ LW+ F D L  Y+Y+K+ +
Sbjct: 274 YLFYNALSDLFASINPYLLWI-FSDSLRKYVYWKMGI 309


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
 Frame = -1

Query: 540 LFNNGFFFSTXLCGLYFFQLANLFSRHRC-YISILFSLIYCDFLFSY*SI---HFL*GCF 373
           + N G+ F+T +   +F + AN     RC +I+I ++L+   F++ Y  +   H +    
Sbjct: 66  VINTGYGFATFITDGFFTENANYAISSRCTFIAISYALLIIHFVYRYFILFHPHLVDKML 125

Query: 372 YTFCIFAFLPLGVF*GHSF-WL--YLLQDSRNMKIVLCSWKPCFTYLI*I-IDSLKSIVS 205
               +FA + L    G S+ WL  + L  +  ++ ++   +P F  +  +  D++  +  
Sbjct: 126 QPLGVFAMIALTAAHGASWTWLCDWCLAPNEEIRDIV---RPAFKEVHHVNSDNISLLTG 182

Query: 204 LY-FLSHFILFKS 169
            Y   S+F+++KS
Sbjct: 183 QYRNASNFVVYKS 195


>Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical
           protein K09A9.1 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 237 ISNK*SMASKNTILSSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENVSTNMKIR 416
           I  K  M  K  +   YY      +  KNVL ++ E+K   C+   +IL E    + +  
Sbjct: 462 ILKKQDMIVKMDLFEMYYNTYKDRLLPKNVLPMYEEMK--ACRNDSTILTEMAKRDFRSI 519

Query: 417 NHNKLKRIEWK 449
                +RIE K
Sbjct: 520 QEQMKRRIETK 530


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294
           Y+ Y   S LFA + P+ LW+ F D L  Y+ Y++
Sbjct: 269 YVLYNLLSDLFASINPYLLWI-FSDSLRKYVLYQV 302


>AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6b protein.
          Length = 213

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294
           Y+FY   S L+A + P+ LW+ F D L  +I+++I
Sbjct: 161 YLFYNAISDLYAGINPYLLWI-FSDSLRKHIWHRI 194


>AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6a protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 395 YIFYEDASTLFAYL-PFYLWVYFEDILFGYIYYKI 294
           Y+FY   S L+A + P+ LW+ F D L  +I+++I
Sbjct: 281 YLFYNAISDLYAGINPYLLWI-FSDSLRKHIWHRI 314


>AF125451-7|AAD12826.1|  136|Caenorhabditis elegans Hypothetical
           protein Y37E11B.6 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 SSYYGNLVVNIAKKNVLKIHPEVKRQICKKCRSILIENV-STNMKIRNHNKLKRIEWKCN 455
           S +   L   +    ++ +  E K+Q CK CR +L+ N   T + ++    +     KC 
Sbjct: 52  SRHVSKLCRQVMDTEMVHLDCEQKQQFCKICREVLVGNYEKTEISVKQRGSVTE---KCG 108

Query: 456 ICGERK 473
            C + +
Sbjct: 109 NCHKER 114


>AL117195-29|CAB55017.2|  204|Caenorhabditis elegans Hypothetical
           protein Y57A10A.14 protein.
          Length = 204

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 324 VLKIHPEVKRQICKKCRS 377
           +L I P+++R ICKKCR+
Sbjct: 181 LLFIPPQIRRPICKKCRT 198


>AF003384-4|AAO21379.1|  339|Caenorhabditis elegans Hypothetical
           protein K07B1.4b protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 373 LHFLHICLFTSGCILRTFFLAIFTTRFP*YEDSIVFLEAMLYLFDINN 230
           LHF  I LFT   +L   F  ++T  +P     ++FL  +  ++D N+
Sbjct: 26  LHFFFITLFTPVLVLTVPFYMLYTVLWP-----LIFLYGLWMIYDWNS 68


>AF003384-3|AAK71373.1|  349|Caenorhabditis elegans Hypothetical
           protein K07B1.4a protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 373 LHFLHICLFTSGCILRTFFLAIFTTRFP*YEDSIVFLEAMLYLFDINN 230
           LHF  I LFT   +L   F  ++T  +P     ++FL  +  ++D N+
Sbjct: 36  LHFFFITLFTPVLVLTVPFYMLYTVLWP-----LIFLYGLWMIYDWNS 78


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  KKCKKFIENSNEQVERNQRLSNNF 99
           +KCK  I+NSN    +NQ L+N F
Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  KKCKKFIENSNEQVERNQRLSNNF 99
           +KCK  I+NSN    +NQ L+N F
Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  KKCKKFIENSNEQVERNQRLSNNF 99
           +KCK  I+NSN    +NQ L+N F
Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  KKCKKFIENSNEQVERNQRLSNNF 99
           +KCK  I+NSN    +NQ L+N F
Sbjct: 148 RKCKAVIDNSNGNNLQNQELTNIF 171


>Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical
           protein Y41E3.12 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 519 FSTXLCGLYFFQLANLFSRHRCYISILFSLIYCDFLFSY 403
           F   +  L F + A+   +   YISILF   Y  ++F +
Sbjct: 129 FLNRVISLAFHEYADSIEKRLAYISILFCFSYAFYIFMF 167


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491
           +S+N++ +NH  ++ ++ +C     R   PA++
Sbjct: 267 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 299


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491
           +S+N++ +NH  ++ ++ +C     R   PA++
Sbjct: 170 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 202


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 393 VSTNMKIRNHNKLKRIEWKCNICGERKGLPAEK 491
           +S+N++ +NH  ++ ++ +C     R   PA++
Sbjct: 181 ISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQR 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,640
Number of Sequences: 27780
Number of extensions: 286717
Number of successful extensions: 943
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)