Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1055
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17340.1 68414.m02113 phosphoinositide phosphatase family pro...    31   0.72 
At1g72410.1 68414.m08374 COP1-interacting protein-related simila...    29   2.9  

>At1g17340.1 68414.m02113 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 5 (SAC5)  GI:31415726
          Length = 785

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 143 RTENNIIVL-LLNKIKCDKKYRETMLFNESIIYIK*VKHGFQEHNTIFILRESCSKYSQK 319
           R  N II+L LL  +  +KK+RET+L  E    I+ +  G    + +  +    SK+ +K
Sbjct: 336 RYGNRIIILNLLKTVTGEKKHRETILRGEFAKTIRFINKGMDREHRLKAIHFDLSKHYKK 395


>At1g72410.1 68414.m08374 COP1-interacting protein-related similar to
            COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis thaliana]
            GI:3327870
          Length = 1163

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/71 (19%), Positives = 35/71 (49%)
 Frame = +1

Query: 25   EKKCKKFIENSNEQVERNQRLSNNFLKFSLNPRIKSYGNKNRKQHNCITFK*NKMRQKIQ 204
            +K   + + N +E ++ N + S+  +K ++  ++KS G     + + +  +   +R+   
Sbjct: 814  DKSLAQSVPNFSELIKENTKPSSLAVKTTMRSQVKSSGRTKNIKEDTLLQRPRSLRKSSS 873

Query: 205  GNDAFQRINYL 237
            GN  F  ++ L
Sbjct: 874  GNIDFTELSTL 884


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,919
Number of Sequences: 28952
Number of extensions: 236053
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)