Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    50   1e-07
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   3.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   3.4  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.4  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.0  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +1

Query: 4   YLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANY 180
           Y+V + +L K  + FDI   DS+  CCFT+ YTH V+G GS+            L+++++
Sbjct: 211 YMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSI------------LQMSDH 258

Query: 181 FEVGSDEFLQTLKKLKLRFFTSKEI 255
            E   ++F +    L+LR+FT++E+
Sbjct: 259 -ENTHEQFERNRMALQLRYFTAREV 282



 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 258 QLMSFPSEYSFPKTVTRAQC-YRLLGNSVDVKVISELLQI 374
           +LM FP    + K+    +C YRLLGNS++VKV+S L+ +
Sbjct: 284 RLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISL 323


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 189 YFEIISQF*ILLYYVITCFSEHRACTFYI 103
           +  I++QF  LLY+ I+ + E+   T Y+
Sbjct: 141 FSSILTQFASLLYFYISTWEEYHTGTLYL 169


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 133  ETSYDIVQKYLKLANYFEVGSDEF--LQTLKKLKL 231
            +TSYD +      +NY ++G D+F  +  LKK  L
Sbjct: 1945 QTSYDDIIAMTDESNYTQLGDDDFKTIHGLKKFML 1979


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 151 VQKYLKLANYFEVGSDEFLQTLKKLKL 231
           +QKY K   YF V  D+ L   + +KL
Sbjct: 188 LQKYWKELQYFNVSKDKLLSLEESIKL 214


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 115 TGSVFTETSYDIVQKYL 165
           +GSVFTE  Y  +Q++L
Sbjct: 117 SGSVFTENLYSTIQEFL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,692
Number of Sequences: 5004
Number of extensions: 30029
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)