Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    39   0.002
05_06_0160 - 26073245-26073376,26073546-26073643,26073735-260739...    29   1.4  
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796...    29   1.9  
05_01_0203 + 1459600-1460010                                           27   7.6  

>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 261 LMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQ 371
           L SFPS + FP  ++  Q Y +LGNS+ V V+  LL+
Sbjct: 336 LHSFPSSFHFPNHISLRQQYAMLGNSLSVAVVGPLLR 372



 Score = 30.7 bits (66), Expect = 0.47
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
 Frame = +1

Query: 94  YTHYVEGTGSVFTET--------------SYDIVQKYLKLANYFEVGSDEF-LQTLKKLK 228
           Y  YV+GTGS+   +              S+      LKL N   +  ++  + +LK+L 
Sbjct: 265 YYRYVKGTGSLLATSNASLVLPLNLNIHDSFSFYDYLLKLQNLKRISKEDLEISSLKELG 324

Query: 229 LRFFTSKEICS 261
           LRFFT +E+ +
Sbjct: 325 LRFFTPREVAN 335


>05_06_0160 -
           26073245-26073376,26073546-26073643,26073735-26073902,
           26074707-26074856,26075589-26075610,26075775-26075942
          Length = 245

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 16  DKMLRKANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYL 165
           +K+ + +N   +C  +SN   CF K  T ++ G G + + T   +V  ++
Sbjct: 83  NKIFQNSNFCSLCRTESNSGKCFGK-ITRFIAGLGFITSVTFIFVVGVFM 131


>04_04_1270 -
           32278793-32279095,32279177-32279327,32279427-32279664,
           32279778-32279988,32280067-32280248,32280332-32280448,
           32280828-32282094
          Length = 822

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 10  VPDKMLRKAN-IFDICYADSNRSC-CFTKAYTHY-VEGT 117
           VPDK +   N  FD C A+ NR+C C   AY +  + GT
Sbjct: 348 VPDKFIPVPNRSFDECTAECNRNCSCTAYAYANLTIAGT 386


>05_01_0203 + 1459600-1460010
          Length = 136

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 99  CVCFSKTT*PVRICITNVKYICFP 28
           C C + +  P+R C+  +KY+ FP
Sbjct: 97  CRCKAHSVQPLRHCVLYIKYLWFP 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,131,936
Number of Sequences: 37544
Number of extensions: 153901
Number of successful extensions: 265
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)