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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)                    55   2e-08
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.039
SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019)                   29   1.5  
SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 27   4.5  
SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)                   27   7.8  
SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2)                27   7.8  

>SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9)
          Length = 258

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = +1

Query: 4   YLVPDKMLRKAN-IFDICYADSNRSCCFTKAYTHYVEGTGSV 126
           +L+P K+L + + + DI  A S RSCCFTKAY HY EGTGSV
Sbjct: 210 FLLPTKVLSRFSLVLDIVTAKSRRSCCFTKAYGHYAEGTGSV 251


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 258  QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQISSDE*EC 395
            +L  FPS Y+    + R Q  RLLGN+  V V+  LL    D  +C
Sbjct: 1673 RLFGFPSHYTDVNNMGRTQRQRLLGNAWSVPVVRHLLSPLKDYFKC 1718


>SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019)
          Length = 248

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 145 DIVQKY-LKLANYFEVGSDEFLQTLKKLKLRFFTSKEICS*-CHFLVSIVFLRLLQGHNV 318
           D   +Y L +A Y   GS  FL  L  L + F +SK + +   H L+S+VF   L G   
Sbjct: 11  DFTPRYILDVAVYASEGSIIFLLNLLTLVV-FASSKRLRTRRVHLLMSLVFADCLVGITA 69

Query: 319 IGFLEIV 339
           IG+  IV
Sbjct: 70  IGYAVIV 76


>SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 82  FTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRFFTSKEICS 261
           F KA  H+++    + T   +   + +LK  N+F + S  FL+T+      F  S+ +  
Sbjct: 50  FLKAVNHFIDSRVFLKTVNHFIDSRVFLKTVNHF-IDSRAFLKTVN----HFIDSRVLLK 104

Query: 262 *C-HFLVSIVFLR 297
              HF+ S VFL+
Sbjct: 105 TVNHFIDSRVFLK 117



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 73  SCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRFFT 243
           S  F K   H+++    + T   +   + +LK  N+F + S  FL ++ + K + F+
Sbjct: 469 SRAFLKTVNHFIDSRAFLNTVNHFIDSRAFLKTVNHF-IDSRAFLNSVARHKFKVFS 524


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 109 EGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKL 225
           EGTG    ET  D+   YL+     E+  DE LQ  + L
Sbjct: 4   EGTGKDDKETDTDLNSDYLEYLQNVELEHDEILQEKEDL 42


>SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46)
          Length = 413

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 260 LQISLDVKNLSLSFFKVCRNSSLPTSK 180
           L +S++ +NL  S+F  C N+++ T+K
Sbjct: 124 LGLSVEKQNLIFSYFSECLNATIETAK 150


>SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2)
          Length = 445

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 106 VEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRF 237
           V+ T  ++T  S +I  K  +  N F+V S  FLQT +    RF
Sbjct: 336 VKSTREIYT-VSTNIPWKPTRFLNPFQVKSTRFLQTYRVKSTRF 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,213
Number of Sequences: 59808
Number of extensions: 209209
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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