BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1054X (407 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9) 55 2e-08 SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.039 SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019) 29 1.5 SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5 SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 27 4.5 SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46) 27 7.8 SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2) 27 7.8 >SB_566| Best HMM Match : Keratin_B2 (HMM E-Value=9) Length = 258 Score = 55.2 bits (127), Expect = 2e-08 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%) Frame = +1 Query: 4 YLVPDKMLRKAN-IFDICYADSNRSCCFTKAYTHYVEGTGSV 126 +L+P K+L + + + DI A S RSCCFTKAY HY EGTGSV Sbjct: 210 FLLPTKVLSRFSLVLDIVTAKSRRSCCFTKAYGHYAEGTGSV 251 >SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1719 Score = 34.3 bits (75), Expect = 0.039 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 258 QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQISSDE*EC 395 +L FPS Y+ + R Q RLLGN+ V V+ LL D +C Sbjct: 1673 RLFGFPSHYTDVNNMGRTQRQRLLGNAWSVPVVRHLLSPLKDYFKC 1718 >SB_15254| Best HMM Match : 7tm_1 (HMM E-Value=0.019) Length = 248 Score = 29.1 bits (62), Expect = 1.5 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = +1 Query: 145 DIVQKY-LKLANYFEVGSDEFLQTLKKLKLRFFTSKEICS*-CHFLVSIVFLRLLQGHNV 318 D +Y L +A Y GS FL L L + F +SK + + H L+S+VF L G Sbjct: 11 DFTPRYILDVAVYASEGSIIFLLNLLTLVV-FASSKRLRTRRVHLLMSLVFADCLVGITA 69 Query: 319 IGFLEIV 339 IG+ IV Sbjct: 70 IGYAVIV 76 >SB_48327| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 577 Score = 27.5 bits (58), Expect = 4.5 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 82 FTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRFFTSKEICS 261 F KA H+++ + T + + +LK N+F + S FL+T+ F S+ + Sbjct: 50 FLKAVNHFIDSRVFLKTVNHFIDSRVFLKTVNHF-IDSRAFLKTVN----HFIDSRVLLK 104 Query: 262 *C-HFLVSIVFLR 297 HF+ S VFL+ Sbjct: 105 TVNHFIDSRVFLK 117 Score = 27.5 bits (58), Expect = 4.5 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = +1 Query: 73 SCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRFFT 243 S F K H+++ + T + + +LK N+F + S FL ++ + K + F+ Sbjct: 469 SRAFLKTVNHFIDSRAFLNTVNHFIDSRAFLKTVNHF-IDSRAFLNSVARHKFKVFS 524 >SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) Length = 2084 Score = 27.5 bits (58), Expect = 4.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +1 Query: 109 EGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKL 225 EGTG ET D+ YL+ E+ DE LQ + L Sbjct: 4 EGTGKDDKETDTDLNSDYLEYLQNVELEHDEILQEKEDL 42 >SB_38068| Best HMM Match : UreE_N (HMM E-Value=0.46) Length = 413 Score = 26.6 bits (56), Expect = 7.8 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = -1 Query: 260 LQISLDVKNLSLSFFKVCRNSSLPTSK 180 L +S++ +NL S+F C N+++ T+K Sbjct: 124 LGLSVEKQNLIFSYFSECLNATIETAK 150 >SB_26313| Best HMM Match : Gemini_AL3 (HMM E-Value=4.2) Length = 445 Score = 26.6 bits (56), Expect = 7.8 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 106 VEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRF 237 V+ T ++T S +I K + N F+V S FLQT + RF Sbjct: 336 VKSTREIYT-VSTNIPWKPTRFLNPFQVKSTRFLQTYRVKSTRF 378 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,429,213 Number of Sequences: 59808 Number of extensions: 209209 Number of successful extensions: 373 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 355 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 740151420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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