Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118475-1|AAM49844.1|  331|Drosophila melanogaster GM14972p pro...    66   2e-11
AE014134-2157|AAF53163.1|  345|Drosophila melanogaster CG10692-P...    66   2e-11
AE014134-2156|ABI31309.1|  345|Drosophila melanogaster CG10692-P...    66   2e-11
AF185647-1|AAF03835.1|  345|Drosophila melanogaster DNA (5-cytos...    65   4e-11
BT023180-1|AAY55596.1|  118|Drosophila melanogaster IP03266p pro...    31   0.77 
BT023152-1|AAY55568.1|  113|Drosophila melanogaster IP03466p pro...    31   0.77 
BT023141-1|AAY55557.1|  120|Drosophila melanogaster IP03566p pro...    31   0.77 
S71762-1|AAB31734.3|  297|Drosophila melanogaster ADP/ATP transl...    28   4.1  

>AY118475-1|AAM49844.1|  331|Drosophila melanogaster GM14972p
           protein.
          Length = 331

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
 Frame = +1

Query: 1   DYLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLAN 177
           D+LVPD +L K   + DI +   +RS CFTK YTHY EGTGS +T  S D   +  +L  
Sbjct: 192 DFLVPDDVLTKRVLVMDIIHPAQSRSMCFTKGYTHYTEGTGSAYTPLSEDESHRIFELVK 251

Query: 178 YFEVG------SDEFLQ----TLKKLKLRFFTSKEI 255
             +        S++ LQ     L +++LR+FT +E+
Sbjct: 252 EIDTSNQDASKSEKILQQRLDLLHQVRLRYFTPREV 287



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQI 374
           +LMSFP  + FP   T  Q YRLLGNS++VKV+ EL+++
Sbjct: 289 RLMSFPENFEFPPETTNRQKYRLLGNSINVKVVGELIKL 327


>AE014134-2157|AAF53163.1|  345|Drosophila melanogaster CG10692-PA,
           isoform A protein.
          Length = 345

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
 Frame = +1

Query: 1   DYLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLAN 177
           D+LVPD +L K   + DI +   +RS CFTK YTHY EGTGS +T  S D   +  +L  
Sbjct: 206 DFLVPDDVLTKRVLVMDIIHPAQSRSMCFTKGYTHYTEGTGSAYTPLSEDESHRIFELVK 265

Query: 178 YFEVG------SDEFLQ----TLKKLKLRFFTSKEI 255
             +        S++ LQ     L +++LR+FT +E+
Sbjct: 266 EIDTSNQDASKSEKILQQRLDLLHQVRLRYFTPREV 301



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQI 374
           +LMSFP  + FP   T  Q YRLLGNS++VKV+ EL+++
Sbjct: 303 RLMSFPENFEFPPETTNRQKYRLLGNSINVKVVGELIKL 341


>AE014134-2156|ABI31309.1|  345|Drosophila melanogaster CG10692-PC,
           isoform C protein.
          Length = 345

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
 Frame = +1

Query: 1   DYLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLAN 177
           D+LVPD +L K   + DI +   +RS CFTK YTHY EGTGS +T  S D   +  +L  
Sbjct: 206 DFLVPDDVLTKRVLVMDIIHPAQSRSMCFTKGYTHYTEGTGSAYTPLSEDESHRIFELVK 265

Query: 178 YFEVG------SDEFLQ----TLKKLKLRFFTSKEI 255
             +        S++ LQ     L +++LR+FT +E+
Sbjct: 266 EIDTSNQDASKSEKILQQRLDLLHQVRLRYFTPREV 301



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQI 374
           +LMSFP  + FP   T  Q YRLLGNS++VKV+ EL+++
Sbjct: 303 RLMSFPENFEFPPETTNRQKYRLLGNSINVKVVGELIKL 341


>AF185647-1|AAF03835.1|  345|Drosophila melanogaster DNA
           (5-cytosine) methyltransferasehomolog protein.
          Length = 345

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
 Frame = +1

Query: 1   DYLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLAN 177
           D+LVPD +L K   + DI +   +RS CFTK YTHY EGTGS +T  S D   +  +L  
Sbjct: 206 DFLVPDDVLTKRVLVMDIIHPAQSRSMCFTKGYTHYTEGTGSAYTPLSEDESHRIFELVK 265

Query: 178 YFEVGSDEF----------LQTLKKLKLRFFTSKEI 255
             +  + +           L  L +++LR+FT +E+
Sbjct: 266 EIDTSNQDASKSEKIVQQRLDLLHQVRLRYFTPREV 301



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +3

Query: 258 QLMSFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQI 374
           +LMSFP  + FP   T  Q YRLLGNS++VKV+ EL+++
Sbjct: 303 RLMSFPENFEFPPETTNRQKYRLLGNSINVKVVGELIKL 341


>BT023180-1|AAY55596.1|  118|Drosophila melanogaster IP03266p
           protein.
          Length = 118

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  CYADSNRSCCFTKAYTHYVEGTGS 123
           C+ +S   CC+TKA   +  GTGS
Sbjct: 15  CFGESGADCCWTKAKLLFTMGTGS 38


>BT023152-1|AAY55568.1|  113|Drosophila melanogaster IP03466p
           protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  CYADSNRSCCFTKAYTHYVEGTGS 123
           C+ +S   CC+TKA   +  GTGS
Sbjct: 10  CFGESGADCCWTKAKLLFTMGTGS 33


>BT023141-1|AAY55557.1|  120|Drosophila melanogaster IP03566p
           protein.
          Length = 120

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  CYADSNRSCCFTKAYTHYVEGTGS 123
           C+ +S   CC+TKA   +  GTGS
Sbjct: 17  CFGESGADCCWTKAKLLFTMGTGS 40


>S71762-1|AAB31734.3|  297|Drosophila melanogaster ADP/ATP
           translocase protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 58  ADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYL 165
           A     C F  A+++ + GTG  F    YD ++K L
Sbjct: 262 AKQEAPCFFKGAFSNILRGTGGAFVLVLYDEIKKVL 297


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,995
Number of Sequences: 53049
Number of extensions: 291812
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)