Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    28   2.3  
U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 276 SEYSFPKTVTRAQCYRLLGNSV----DVKVISELLQISSDE*ECN 398
           +E S   + T+ +CYRL  NS+    D  ++  L  + S E EC+
Sbjct: 406 TESSIGGSGTKKECYRLYNNSIYNSFDATIVGGLQDLESCESECS 450


>U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical
           protein K10C2.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 356 DNLNIYTISKKPI--TLCPCNSLRKTILTRK*H*LQISLDVKNLSLSFFKVCRNSSLPTS 183
           D+L I T     I  T+ PCN+ + T+         +S+  ++L +SFF  CR   +PT+
Sbjct: 319 DSLGISTNVMNAIYPTIVPCNT-KITLTFGFVSGTTVSITERDLVISFFGTCRLQIIPTT 377


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 338 TISKKPITLCPCNSLRKTILTR 273
           T+ KKP T CP    R  I+TR
Sbjct: 296 TLRKKPKTRCPAKEERDVIITR 317


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 16  DKMLRKANIFDICYADSNRSCCFTKAYTHYVEGTG-SVFTETSYDIVQKYLKLANYFEVG 192
           ++ML K    + CY D          Y  YV+    S  T+ SY+ ++K+LK     +VG
Sbjct: 546 NEMLHKLEFREECYGDVGSH----NMYRDYVQFLNYSNITDKSYNHLEKFLKGRGMADVG 601

Query: 193 SDEF 204
           + ++
Sbjct: 602 TIKY 605


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 67  NRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKL 231
           N    FT+  +  +EG  +  T+  +  V+K L+ A       D F+Q + +LKL
Sbjct: 600 NGDSSFTELNSQ-LEGAKTELTKNLFTAVKKALRNATETTDDQDSFIQRISELKL 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,710,593
Number of Sequences: 27780
Number of extensions: 165398
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)