Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1054X
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam...    55   2e-08
At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related...    29   1.6  
At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    28   2.8  
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si...    26   8.5  

>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
           protein contains Pfam profile PF00145: C-5
           cytosine-specific DNA methylase
          Length = 383

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +1

Query: 4   YLVPDKMLRK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANY 180
           YLVP  ++ +  N  DI Y DS R CCFTK+Y  YV+GTGS+        VQ  +K    
Sbjct: 270 YLVPVSLIERWGNAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLA-----TVQPKIK---- 320

Query: 181 FEVGSDEFLQTLKKLKLRFFTSKEICS 261
              G +     LK+ +LR+FT +E+ +
Sbjct: 321 ---GKE---SCLKEQRLRYFTPREVAN 341



 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +3

Query: 267 SFPSEYSFPKTVTRAQCYRLLGNSVDVKVISELLQISSD 383
           SFP ++ FPK ++  Q Y +LGNS+ V V++ LL+   D
Sbjct: 344 SFPEDFEFPKHISLRQRYAMLGNSLSVAVVAPLLRYLFD 382


>At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related
           similar to storekeeper protein GI:14268476 [Solanum
           tuberosum]
          Length = 328

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +1

Query: 28  RKANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFL 207
           +K  +F   + D +    F +    + + TG   +E      +K LK +  FEV +D+F+
Sbjct: 144 KKPLLFQRLWTDEDE-IVFLQGMIKFAKDTGKNVSEDMNGFFEK-LKDSISFEVKTDQFV 201

Query: 208 QTLKKLKLRFFTSKE 252
             ++ +K ++  +K+
Sbjct: 202 NKIRSMKRKYIENKK 216


>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +1

Query: 103 YVEGTGSVFTETSYDIVQKYLKLANYFEVGSDEFLQTLKKLKLRFFTSKEICS*CHFLVS 282
           YV  T SV  +   ++ ++ L+  +     +   + T  K  LR   +  +C+ CH   +
Sbjct: 695 YVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCH--TA 752

Query: 283 IVFLRLLQGHNVI 321
           I F+  L G  +I
Sbjct: 753 IKFISKLVGREII 765


>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein similar
            to lysosomal alpha-mannosidase GI:3522867 from [Homo
            sapiens]
          Length = 1019

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 163  LKLANYFEVGSDEFLQTLKKLKL-RFFTSKEI 255
            L+LA+ FEVG D     + K++L + F +K+I
Sbjct: 911  LRLAHLFEVGEDSEYSVMAKVELKKLFHNKKI 942


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,893,515
Number of Sequences: 28952
Number of extensions: 140121
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)