Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1053
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IRD0 Cluster: CG32267-PA; n=2; Sophophora|Rep: CG3226...    36   0.15 
UniRef50_A1ZLC6 Cluster: Putative ABC transporter permease; n=1;...    33   1.0  
UniRef50_Q8VB89 Cluster: Wsv094; n=1; Shrimp white spot syndrome...    32   3.1  
UniRef50_A4HEY1 Cluster: Putative uncharacterized protein; n=2; ...    32   3.1  
UniRef50_Q0AZW2 Cluster: ABC sugar transporter, inner membrane s...    30   9.5  

>UniRef50_Q8IRD0 Cluster: CG32267-PA; n=2; Sophophora|Rep:
           CG32267-PA - Drosophila melanogaster (Fruit fly)
          Length = 49

 Score = 36.3 bits (80), Expect = 0.15
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 57  MFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPLVLEH 194
           MFRL   +     E+KR A E   N ++ FG + A +R+AP+VL+H
Sbjct: 1   MFRLQQSQPDPAEEQKRVAAEVRFNFIL-FGAVIAAVRLAPIVLKH 45


>UniRef50_A1ZLC6 Cluster: Putative ABC transporter permease; n=1;
           Microscilla marina ATCC 23134|Rep: Putative ABC
           transporter permease - Microscilla marina ATCC 23134
          Length = 800

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 9   DKIEK*LFLAN*LIAKMFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPLVL 188
           DK +    L N L AK F+L  G+ V   +  R+ +   I  V  F +     ++APL++
Sbjct: 554 DKTDSSKVLINQLAAKQFKLGVGDYVRSADTSRRFKAKVIGIVKDFHLQSLHNKMAPLII 613

Query: 189 EH 194
            H
Sbjct: 614 AH 615


>UniRef50_Q8VB89 Cluster: Wsv094; n=1; Shrimp white spot syndrome
           virus|Rep: Wsv094 - White spot syndrome virus (WSSV)
          Length = 163

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = -2

Query: 300 HLNCFY---YYCCFFVGTLLVEY*SC---HCTLHYL 211
           H +C+Y   YYCC++       Y  C   HC  HYL
Sbjct: 48  HFHCYYCCCYYCCYYYYCCYCCYYCCCCYHCRCHYL 83


>UniRef50_A4HEY1 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Leishmania braziliensis
          Length = 1535

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 251 LWNIDHVTAHCTICLLKTTMFQYQGSDSYNCTHY 150
           LW  DH+TA CT C    T+F  +    ++C H+
Sbjct: 6   LWRDDHLTAQCTACAAVFTLFHRR---RHHCRHW 36


>UniRef50_Q0AZW2 Cluster: ABC sugar transporter, inner membrane
           subunit precursor; n=1; Syntrophomonas wolfei subsp.
           wolfei str. Goettingen|Rep: ABC sugar transporter, inner
           membrane subunit precursor - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 294

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -1

Query: 256 SSCGILIMSLHTALSAY*KLPCSSTKGAILIIAHIIPNVITLLI 125
           SS  ILI+SL  AL    K P       IL+I  ++P+V+++LI
Sbjct: 76  SSIIILILSLALALLLNMKFPLRKFFRGILMIPWVVPSVVSVLI 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,775,473
Number of Sequences: 1657284
Number of extensions: 4120843
Number of successful extensions: 9409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9406
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)