BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1053 (349 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 0.83 SPBC216.06c |swi1||replication fork protection complex subunit S... 25 4.4 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 24 7.8 >SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 817 Score = 27.1 bits (57), Expect = 0.83 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = -3 Query: 242 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 63 I + +C++ L + MF GSD+Y + + AI + F+ R+Y Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI-----LIRFYHIRLYGKKCKSL 760 Query: 62 EHFC 51 FC Sbjct: 761 YQFC 764 >SPBC216.06c |swi1||replication fork protection complex subunit Swi1|Schizosaccharomyces pombe|chr 2|||Manual Length = 971 Score = 24.6 bits (51), Expect = 4.4 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = +3 Query: 72 FGERVDPMEEKRQARENTINSVITF---GIMCAIIRI 173 F E VD + RQA+ N NS++++ ++ AI+ + Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAV 146 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 23.8 bits (49), Expect = 7.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 161 CTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 63 C + YYAID+++A F +RI SKG + Sbjct: 473 CMETMEGYYAIDNLIAKCEFLGNRI---SKGMA 502 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,129,850 Number of Sequences: 5004 Number of extensions: 19266 Number of successful extensions: 45 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 45 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 104153322 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -