Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1053
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0042 + 18550353-18550361,18550683-18550878,18551024-185511...    27   4.0  
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    26   9.3  
05_07_0097 - 27666456-27666719,27666837-27667022,27667233-276673...    26   9.3  

>11_05_0042 +
           18550353-18550361,18550683-18550878,18551024-18551169,
           18551278-18551364
          Length = 145

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 RNSSCGILIMSLHTALSAY*KLPCSSTKG 176
           R  S GI I S  TA+  + +L CS TKG
Sbjct: 80  RGKSMGISIDSEPTAIDLFKELHCSKTKG 108


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 128 DSVLACLTFFFHRIYSFSKGQSE 60
           D  L C  F  HRIY FS+ + E
Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPE 459


>05_07_0097 -
           27666456-27666719,27666837-27667022,27667233-27667387,
           27667488-27667620,27667718-27667908,27668078-27668513
          Length = 454

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +2

Query: 53  KNVQIALWRKSRSDGRKTSSTREHYQ 130
           K   +++W++  SDG+K+++  +H++
Sbjct: 305 KIADLSVWQEVVSDGKKSTANNDHHE 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,725,184
Number of Sequences: 37544
Number of extensions: 108681
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)