BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1053 (349 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_05_0042 + 18550353-18550361,18550683-18550878,18551024-185511... 27 4.0 08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 26 9.3 05_07_0097 - 27666456-27666719,27666837-27667022,27667233-276673... 26 9.3 >11_05_0042 + 18550353-18550361,18550683-18550878,18551024-18551169, 18551278-18551364 Length = 145 Score = 27.1 bits (57), Expect = 4.0 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -1 Query: 262 RNSSCGILIMSLHTALSAY*KLPCSSTKG 176 R S GI I S TA+ + +L CS TKG Sbjct: 80 RGKSMGISIDSEPTAIDLFKELHCSKTKG 108 >08_02_1563 + 27886202-27886446,27886533-27886618,27886942-27887030, 27887193-27887432,27887527-27887648,27888103-27888178, 27888276-27888383,27888465-27888641,27888959-27889176, 27889313-27889445,27889584-27889807,27890052-27890205, 27890297-27890380 Length = 651 Score = 25.8 bits (54), Expect = 9.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -3 Query: 128 DSVLACLTFFFHRIYSFSKGQSE 60 D L C F HRIY FS+ + E Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPE 459 >05_07_0097 - 27666456-27666719,27666837-27667022,27667233-27667387, 27667488-27667620,27667718-27667908,27668078-27668513 Length = 454 Score = 25.8 bits (54), Expect = 9.3 Identities = 7/26 (26%), Positives = 19/26 (73%) Frame = +2 Query: 53 KNVQIALWRKSRSDGRKTSSTREHYQ 130 K +++W++ SDG+K+++ +H++ Sbjct: 305 KIADLSVWQEVVSDGKKSTANNDHHE 330 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,725,184 Number of Sequences: 37544 Number of extensions: 108681 Number of successful extensions: 210 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 210 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 506210712 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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