Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1053
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                27   3.2  
SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)                  27   3.2  
SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)                   27   4.2  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_19749| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)                  26   9.7  

>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 503

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 158 THYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEHFCD 48
           +H+  +  AI  +L C+T    +    SK  + H C+
Sbjct: 194 SHFYHKSLAIKDILLCVTLQLRQFRRASKAHAHHMCE 230


>SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)
          Length = 497

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 182 QGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEHFCD*LI 39
           Q   SY  T Y   ++ +D ++  L FFF+ +  F KG  + + + LI
Sbjct: 213 QFGPSYKATEYRALFHVLDEIVP-LVFFFYPVV-FRKGNIKEYEEALI 258


>SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)
          Length = 375

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/38 (23%), Positives = 25/38 (65%)
 Frame = -3

Query: 173 DSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQSE 60
           ++++C  Y+++ +++ S++   TFF+ R+ S  + + E
Sbjct: 6   EAWSCQTYTRQVHSLLSLIKLHTFFYWRVQSKEEEEQE 43


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 300 HLNCFYYYCCFFVGTLLVEY*SCHCTLHYLPTEN 199
           HL+C YY+ C+    L +     H  LH +P  N
Sbjct: 335 HLHCHYYHHCYNSDALPLMKNKFHDILHNVPEMN 368


>SB_19749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 197 TMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQSEHF 54
           T+++    DS +CT ++++   I   L    +  HRI+      S  F
Sbjct: 35  TLYRLHQKDSAHCTEFTRQTARIVQTLPDKQWALHRIHQTDSAHSTDF 82


>SB_46574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 242 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 105
           +++ TA+  I  L TT    Q  +SY  +HY   ++ + ++++ LT
Sbjct: 1   MENQTANSDIANL-TTSINKQNLNSYFSSHYQTWFWVLHALISALT 45


>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
          Length = 254

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 191 FQYQGSDSYNCTHYSKRYYAIDSVLACLT 105
           F Y   D++NC H    YY +   +  +T
Sbjct: 68  FDYNDDDNHNCGHADADYYHMTLAMLMMT 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,099,081
Number of Sequences: 59808
Number of extensions: 138005
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)