Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1053
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    29   0.91 
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   1.6  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   2.8  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   2.8  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   2.8  

>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 242 IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLAC 111
           +D +T  C +C  KTT F Y       C  + +R      VL C
Sbjct: 1   MDCITRSCKVCNEKTTGFNYGVQSCNACKMFFRRALDTPKVLKC 44


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 224 HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSK 72
           H +IC+ +     Y   DS NC  ++++  A++ V  C+  FF+ +  F K
Sbjct: 60  HVSICVDRIETNYYYDDDSSNC--FNRKQKAVEGV-DCMNAFFNDLKLFLK 107


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 230 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 105
           +  C IC  + T F ++      C  + +R  A+     C+T
Sbjct: 9   STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 230 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 105
           +  C IC  + T F ++      C  + +R  A+     C+T
Sbjct: 27  STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 68


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 230 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 105
           +  C IC  + T F ++      C  + +R  A+     C+T
Sbjct: 9   STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,313,559
Number of Sequences: 27780
Number of extensions: 111607
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)