Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1053
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    26   7.9  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = -3

Query: 224 HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAID-SVLACLTFFFHR-------IYSFSKG 69
           +C++C  K+T F Y+ S++ +C     +   ID   +  L +F H        I + SKG
Sbjct: 490 NCSVCSRKSTGFMYRCSET-DCRLLKDQVLQIDVRCILVLDYFTHESHEHPLFICTSSKG 548

Query: 68  QSEHFCD 48
           +++  C+
Sbjct: 549 ENKICCE 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,676,374
Number of Sequences: 28952
Number of extensions: 94548
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)