Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1052
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Re...    35   1.1  
UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_Q4JN17 Cluster: Predicted outer membrane protein SMc027...    33   3.4  
UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;...    33   4.5  
UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein precur...    33   4.5  
UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2; Euther...    33   6.0  

>UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Rep:
           ACR023Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 769

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 7   PRPSEPKPTSPARGAPCRPTNEALARRGRH 96
           P P +P+PTSPA+ A  RP++ +L   G H
Sbjct: 550 PPPGDPQPTSPAQNATRRPSDASLGYPGSH 579


>UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 206

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 4   LPRPSEPKPTSPARGAPCRPTNEA--LARRGRHGTTVAYIVDDSGS 135
           LPRPS   PT P R  P  P   A  LARR  H    ++++ + GS
Sbjct: 142 LPRPSAATPTKPERPPPRTPAPSAPQLARRD-HPAEASFLIGEKGS 186


>UniRef50_Q4JN17 Cluster: Predicted outer membrane protein SMc02721;
           n=1; uncultured bacterium BAC13K9BAC|Rep: Predicted
           outer membrane protein SMc02721 - uncultured bacterium
           BAC13K9BAC
          Length = 731

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -1

Query: 228 SMTAKSYISKYDTEXXXXXXXXXXXRWKFMVGARVVNDVGDGGSVTTTPRQSLVCWSAGC 49
           S+TAK Y +KY               WK  VG   V+D G  G  T+T + S + W+  C
Sbjct: 289 SLTAKIYKAKYSRN------------WK-KVGEMTVDDDGSAGGDTSTVKMSAIDWTTNC 335

Query: 48  AA 43
           AA
Sbjct: 336 AA 337


>UniRef50_UPI0000F2C24B Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 466

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +1

Query: 280 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPAIRESL 441
           LL  ++G D  L+V++CV+   KY ++TL +LG+  R   +  +QR  A R +L
Sbjct: 374 LLQDSIGGDAKLLVLLCVSPCQKYLAETLQSLGFGSR---ARQVQRVQAKRRNL 424


>UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein
           precursor; n=1; Solibacter usitatus Ellin6076|Rep:
           Putative uncharacterized protein precursor - Solibacter
           usitatus (strain Ellin6076)
          Length = 697

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 10  RPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSG 132
           R +  KP +P +G P  P+    AR  +   TVA +VDD G
Sbjct: 79  RATSAKPAAPVKGVPPPPSPPMAARPKQIRRTVALVVDDLG 119


>UniRef50_Q9UIL4 Cluster: Kinesin-like protein KIF25; n=2;
           Eutheria|Rep: Kinesin-like protein KIF25 - Homo sapiens
           (Human)
          Length = 384

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +1

Query: 280 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 426
           LL   LG D  L+VI+C++ S ++ + TL  LG+ +R   +  +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,323,414
Number of Sequences: 1657284
Number of extensions: 8813724
Number of successful extensions: 25724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25594
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)