Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1052
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   2.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.3  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   3.3  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   10.0 
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    25   10.0 
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    25   10.0 

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   LPRPSEPKPTSPARGAPCRPTNEALARR 87
           + +  EP P S A  +P + + EALA R
Sbjct: 59  IQKKKEPSPASSASASPVKKSAEALAER 86


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 123 VNDVGDGGSVTTTPRQSLVCWSAGCAAC 40
           V+ + DG  V   P + L C  +GCA C
Sbjct: 45  VSRIYDGIRVPPKPEEPLNCCQSGCAIC 72


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 289 KALGVDFILIVIICVNVSPKYGSDTLINL 375
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 SKALGVDFILIVIICVNVSPKYGSDTLIN 372
           SK L  + +L + +C NV+P  G D +++
Sbjct: 455 SKTLVRNLVLALSLCHNVTPSKGHDGVVS 483


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 43  RGAPCRPTNEALARRGRHGTTVAYIV 120
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 43  RGAPCRPTNEALARRGRHGTTVAYIV 120
           +G PC+  + + ++ G+HG    +IV
Sbjct: 36  KGRPCKIVDMSTSKTGKHGHAKVHIV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,229
Number of Sequences: 5004
Number of extensions: 37826
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)