Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1052
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               30   1.1  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   4.5  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   5.9  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   7.9  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 280 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRS 393
           LL+ +LG D + ++I C++ S    SDTL  L Y  R+
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 7   PRPSEPKPTSPARG-APCRPTNEAL 78
           P PS P PT P R   P  P++EAL
Sbjct: 298 PTPSPPTPTPPPRSPTPLHPSSEAL 322


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 7   PRPSEPKPTSPARGAPCR 60
           PRPS PKPT P     CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 313 LIVIICVNVSPKYG----SDTLINLGYCLRSLVSTFLQRTPAIRESL 441
           L V ICV +  KYG     D L N G+C     +T  ++  A+ + +
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 7   PRPSEPKPTSPARG 48
           PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 7    PRPSEPKPTSPARG 48
            PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,464
Number of Sequences: 59808
Number of extensions: 279355
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)