Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1052
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16990.1 68415.m01959 expressed protein                             27   6.4  
At5g46060.1 68418.m05664 expressed protein contains Pfam profile...    27   8.5  
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co...    27   8.5  

>At2g16990.1 68415.m01959 expressed protein
          Length = 456

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 277 GLLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCL 387
           G    A+G+  ++++ +  N+S +YG  T++ L  CL
Sbjct: 53  GFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCL 89


>At5g46060.1 68418.m05664 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599; expression
           supported by MPSS
          Length = 248

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 2   FYLDLLSQSQPLLHAAHPADQQTRLWRGVV 91
           ++LD  S +QPL H    A+Q  +  RGV+
Sbjct: 210 YFLDSNSVAQPLYHRTFEAEQIVKKMRGVL 239


>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 326 YV*MYLQNTAAIH*LI*VIVSGLWCQRFSKEHRRYANRYQ 445
           Y+   ++ +A IH     ++   WC+R S E R Y   YQ
Sbjct: 537 YIVQKIKGSAEIH----EVMGDTWCRRRSSELRNYHKNYQ 572


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,761
Number of Sequences: 28952
Number of extensions: 190976
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)