Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1051X
         (412 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DE46 Cluster: Chromosome undetermined scaffold_47, wh...    32   4.0  
UniRef50_Q8IE19 Cluster: Putative uncharacterized protein MAL13P...    31   9.1  
UniRef50_A3DLY3 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  

>UniRef50_A0DE46 Cluster: Chromosome undetermined scaffold_47, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_47, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2982

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = +2

Query: 89   FENLFIFK*HISIYPVNLYFGFEIYHIKEL-FLMIIS*ELSYLI---RTSLNFKLKSIII 256
            F+   IF+ HIS+YP   +F   I+ IK   +L++++  + YL    R S ++  K+ I+
Sbjct: 2606 FQKEVIFRQHISMYPKLNWFSINIHLIKSFNYLLVLTLNICYLADLERQSESYSFKNQIV 2665


>UniRef50_Q8IE19 Cluster: Putative uncharacterized protein
           MAL13P1.165; n=4; Plasmodium|Rep: Putative
           uncharacterized protein MAL13P1.165 - Plasmodium
           falciparum (isolate 3D7)
          Length = 611

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 23  LPNVVCNL*FVFVTCLCYNPYDFENLFIFK*HISIYPVNLYF 148
           LPN+  N  ++F T   +  Y +  LF+F  HI +YPV L+F
Sbjct: 433 LPNLG-NFWYIFSTM--FRDYYYSFLFLFHFHIFLYPVPLFF 471


>UniRef50_A3DLY3 Cluster: Putative uncharacterized protein; n=1;
           Staphylothermus marinus F1|Rep: Putative uncharacterized
           protein - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 136

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 237 N*NQ*SYHTIKKYQMLYKIPKIQLRNNYYLP 329
           N N+ SY+TIK  + LYK   I+   N YLP
Sbjct: 38  NYNECSYYTIKSSEELYKYMGIEESTNIYLP 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,386,736
Number of Sequences: 1657284
Number of extensions: 5903375
Number of successful extensions: 10954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10953
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)