Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1051X
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0272 - 21451536-21451644,21452308-21452366,21452729-214527...    30   0.83 
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    27   4.4  

>02_04_0272 -
           21451536-21451644,21452308-21452366,21452729-21452792,
           21453006-21453079,21453850-21453903,21453991-21454176
          Length = 181

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 134 VNLYFGFEIYHIKELFLMIIS*ELSYLIRTSLNFKLKSIIISYN 265
           VNLYF F + H K L L+ I  E   L+   L+F    ++   N
Sbjct: 118 VNLYFNFAMVHSKLLTLLAIILEFGALVWLLLDFPASQVLPECN 161


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 131 PVNLYFGFEIYH-IKELFLMIIS*ELSYLIRTSLNFK 238
           PVNL FG +I H +KEL L +    L +L+   +  K
Sbjct: 725 PVNLDFGMKILHAVKELGLNVSRTSLDFLLSACVKAK 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,882
Number of Sequences: 37544
Number of extensions: 138552
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)