Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1051X
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)                 31   0.37 
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)                       27   4.5  
SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.9  

>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
          Length = 1102

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 328 PDINNHSTPESGIGPRSGAQCKTMLEGV 411
           PD+ NH       GP+   +CK MLEG+
Sbjct: 727 PDLRNHIEHHDSDGPKLPEECKEMLEGL 754


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -3

Query: 386  CAPDL-GPMPDSGVEWL 339
            C+ DL GP+PD GV+WL
Sbjct: 1975 CSTDLLGPLPDGGVKWL 1991


>SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)
          Length = 360

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 358 SGIGPRSGAQCKTMLEGV 411
           S +GPR+GAQCK  ++ +
Sbjct: 71  SALGPRTGAQCKIRIKNI 88


>SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 349

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 274 TKCCTKFLKSNCGIIIIYPDINNHS-----TPESGIGPRSGAQCK 393
           TKC   F +  C  I +  D ++ +     TP +G GP SG + K
Sbjct: 34  TKCSCNFDRDTCDFINLKSDKSDWTRKSGTTPSTGTGPSSGQRGK 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,009
Number of Sequences: 59808
Number of extensions: 179344
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)