Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1051X
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical...    26   9.2  
AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical...    26   9.2  
AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical...    26   9.2  
AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical...    26   9.2  

>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 98  LFIFK*HISIYPVNLYFGFEIYHIKELFLMIIS*ELSYLI---RTSLNFKLKSIII 256
           +FI K   SIY  + Y+ F    I +LF + +  +LSYLI     S+  KLKS+ I
Sbjct: 193 VFIEKTISSIYITDDYWDFTFLFIVDLFTLPLIIQLSYLITFGNLSVLRKLKSLKI 248


>AC084158-40|AAM15618.2|  354|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1d protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 267 KKYQMLY---KIPKIQLRNNYYLPRYQ*PFYS 353
           +KY M +    +   Q+RNNY++PR+   F S
Sbjct: 105 EKYPMYFTPRSVIDFQMRNNYWIPRHNNTFKS 136


>AC084158-39|AAM15616.2|  483|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1b protein.
          Length = 483

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 267 KKYQMLY---KIPKIQLRNNYYLPRYQ*PFYS 353
           +KY M +    +   Q+RNNY++PR+   F S
Sbjct: 105 EKYPMYFTPRSVIDFQMRNNYWIPRHNNTFKS 136


>AC084158-38|AAM15617.2|  488|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1c protein.
          Length = 488

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 267 KKYQMLY---KIPKIQLRNNYYLPRYQ*PFYS 353
           +KY M +    +   Q+RNNY++PR+   F S
Sbjct: 110 EKYPMYFTPRSVIDFQMRNNYWIPRHNNTFKS 141


>AC084158-37|AAM15615.2|  486|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.1a protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 267 KKYQMLY---KIPKIQLRNNYYLPRYQ*PFYS 353
           +KY M +    +   Q+RNNY++PR+   F S
Sbjct: 108 EKYPMYFTPRSVIDFQMRNNYWIPRHNNTFKS 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,309,060
Number of Sequences: 27780
Number of extensions: 144318
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)