Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1051X
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 404 SSIVLHCAPDLGPMP 360
           S  V+H +P+L PMP
Sbjct: 188 SDFVIHRSPELVPMP 202


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 339 IDIWVDNNYSAVGF*EFCTTFGIF 268
           ID W DN  + + F   C+ F  F
Sbjct: 402 IDNWWDNGSNQIAFSRGCSGFVAF 425


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 392 LHCAPDLGPMPDS 354
           LHC P+LG    S
Sbjct: 349 LHCKPELGQSQSS 361


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 267 KKYQMLYKIPKIQLRNNYY 323
           ++  ++Y IP+  LRN  Y
Sbjct: 611 RRAAVIYGIPRSTLRNKVY 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,124
Number of Sequences: 438
Number of extensions: 1850
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)