Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1050X
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96204 Cluster: Putative uncharacterized protein PFB055...    32   5.0  
UniRef50_Q1ZJ81 Cluster: Sensor protein; n=1; Psychromonas sp. C...    31   6.6  
UniRef50_A2FKW6 Cluster: Adenylate and Guanylate cyclase catalyt...    31   8.7  

>UniRef50_O96204 Cluster: Putative uncharacterized protein PFB0555c;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PFB0555c - Plasmodium falciparum (isolate 3D7)
          Length = 4091

 Score = 31.9 bits (69), Expect = 5.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 264  FNINHLCNIYPFVFYQLHYLSFKVYT*YIIDLI--HHINFVNSNQNIS 401
            F IN+  NIY    Y   YL  +      +D+I  H I F+N N+NI+
Sbjct: 2053 FKINNFNNIYFLCKYSSGYLPLERIIKLFMDVIFGHFIKFININENIN 2100


>UniRef50_Q1ZJ81 Cluster: Sensor protein; n=1; Psychromonas sp.
           CNPT3|Rep: Sensor protein - Psychromonas sp. CNPT3
          Length = 784

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 275 SSLQHLSFCF-LPVTLSVF*SLYMIYHR 355
           SS Q+L FCF L + +S+F SLY + HR
Sbjct: 318 SSSQYLIFCFALSLCISIFVSLYFVNHR 345


>UniRef50_A2FKW6 Cluster: Adenylate and Guanylate cyclase catalytic
           domain containing protein; n=1; Trichomonas vaginalis
           G3|Rep: Adenylate and Guanylate cyclase catalytic domain
           containing protein - Trichomonas vaginalis G3
          Length = 1523

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 114 KTRLYKYIV*FLEIEKLIYQISHRFLALKLYNLK---TXXXXXXXXXXXNCDIFNINHLC 284
           +T +Y  I   + +  +IY+IS+  L++KLY+     T           N ++  +N +C
Sbjct: 104 ETDVYLVISTIVAVFNIIYEISYHTLSMKLYSKNVALTNVPFLNFDPSINWEVIVVNSIC 163

Query: 285 NIYPFVF 305
            I  ++F
Sbjct: 164 IILTYIF 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,192,830
Number of Sequences: 1657284
Number of extensions: 3957777
Number of successful extensions: 7010
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7009
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)