Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1050X
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 266  KNITVKPIKHSPVKLVSFE 210
            K +TV P    P K+ SF+
Sbjct: 1295 KKVTVSPSASVPAKIASFD 1313


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 255 CDIFNINHLCNIYPFVFYQLHYLSFKVYT*Y 347
           C  +   HL    PF+ + +H+L    Y  Y
Sbjct: 75  CSGYFTVHLLFYCPFIIFTVHFLLCTYYFYY 105


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 151 SRNYTIYLYN 122
           SR YT +LYN
Sbjct: 409 SRQYTAFLYN 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,092
Number of Sequences: 336
Number of extensions: 1256
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)