Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1050X
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.0  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   7.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   7.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 404 FTYVLITINKINVMY*IYDISCINFK---RQIM*LVKNKR 294
           + YVL   N+I  +   +D + +NF+     +  L+KN R
Sbjct: 373 YEYVLAVSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTR 412


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 305 KNKRINVAKMIDIKNITVK 249
           KNK++NVA    +K I +K
Sbjct: 600 KNKKVNVAGCRCVKGILLK 618


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 190 RKRCEI*YISFSISRNYTIYLYN 122
           R+RC+   I  S+S NY    YN
Sbjct: 73  RERCKEPKIISSLSNNYKYSNYN 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,973
Number of Sequences: 438
Number of extensions: 1363
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)