Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1049X
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    33   0.013
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   1.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   3.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   3.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.4  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   4.5  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 33.5 bits (73), Expect = 0.013
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = -2

Query: 260 NYLIMSCTSSSDNLTSLSCTINCMSNSVLGGVFTIINFSTLVSLYFFIASRNF*IFWAL* 81
           N +I S ++ S+    LS  +  + N+ L  V+  I  S LVSL++F +  NF       
Sbjct: 78  NAIITSTSTESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPNFPYSKTCI 137

Query: 80  FLHSVS 63
           F+++VS
Sbjct: 138 FIYTVS 143


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 112 EAMKKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSE 231
           E +KKY  T+VE++     PP + L+   ++ E++  +S+
Sbjct: 170 EFLKKYSSTKVERVSEA-APPPSSLNSSTVLDENDSLISQ 208


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 88   HSDFCILCLVSNVQSHM*QWQVKLLSYAF 2
            H  + ILC  ++V S +  W VK++  AF
Sbjct: 1306 HPGYFILCFKASVNSPVTAWPVKVIPNAF 1334


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +1

Query: 61  QDTECKNQSAQKIQKFLEAMKKYKLT 138
           ++T+C ++  QK++++LE + +  LT
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLT 42


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 121 KKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDV 240
           ++ K TRV  L +VN PP+T   + + +   E  L  E +
Sbjct: 487 RRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQM 526


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 257  YLIMSCTSSSDNLTSLSCTINCMSNSVLGGVFTIIN 150
            YL+  C  S  N+  LS       N  L G F +IN
Sbjct: 992  YLLDMCLQSVVNIPLLSIKTTAQRNCTLIGFFPVIN 1027


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  AQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTEL 186
           A ++Q+  E    + L R   ++  + PPRT++
Sbjct: 424 AARLQRLFEFTSNFTLRRKANILAKHLPPRTDI 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,486
Number of Sequences: 5004
Number of extensions: 31853
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)