BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1049X (405 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533... 42 2e-04 12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260... 33 0.086 01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 29 1.8 11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 28 2.4 01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268... 27 7.5 07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 26 9.9 04_03_0661 - 18468244-18469580,18469610-18469619 26 9.9 >12_02_0379 - 18352103-18352246,18352994-18353146,18353258-18353375, 18353785-18353792 Length = 140 Score = 41.5 bits (93), Expect = 2e-04 Identities = 19/72 (26%), Positives = 38/72 (52%) Frame = +1 Query: 22 SLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLI 201 ++A + YL T NQ+ + I +F+ + +KLT +KL ++N P + D + Sbjct: 35 AVAASECKVYEYLLKTPACNQTRESINEFVTRCESFKLTNADKLNVINWRPSSAADAYAM 94 Query: 202 VQESEVRLSEED 237 ++E R S+++ Sbjct: 95 IEECGKRFSKDE 106 >12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531, 2607691-2607733,2607822-2607899,2608026-2608085, 2608272-2608331,2609440-2609577,2609655-2609767, 2610333-2610569,2610867-2610918 Length = 480 Score = 33.1 bits (72), Expect = 0.086 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = -3 Query: 391 SLMQYLSLCKGISLHVGVF----PNRRQERLHRLHYVLELSVASRCWLTI 254 S M Y++L G ++ F N RQ+ LH++H +L + A+RC+L I Sbjct: 411 SFMGYMALALGKLSNLEGFVIQADNLRQQTLHQMHRILTIRQAARCFLAI 460 >01_06_1416 - 37174913-37175006,37175299-37175441,37175932-37176027, 37177125-37177364,37177456-37177812,37178020-37178097, 37178387-37178434,37179406-37179675,37179954-37180054, 37180452-37180605 Length = 526 Score = 28.7 bits (61), Expect = 1.8 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 331 NRRQERLHRLHYVLELSVASRCWLTI 254 N RQ+ LH+L +L A+RC+L+I Sbjct: 451 NLRQQTLHQLRRILTTRQAARCFLSI 476 >11_06_0234 + 21574380-21575197,21576131-21576190,21578320-21580053, 21581859-21582006 Length = 919 Score = 28.3 bits (60), Expect = 2.4 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +1 Query: 103 KFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDII 252 KFL+A +Y ++K V+ PR +LD Q+ + +VR ++DII Sbjct: 34 KFLKAELEYMQPALKK---VSNVPRDQLDEQVKIWAKDVRELSYSIEDII 80 >01_06_1821 + 40126389-40126508,40126589-40126646,40126782-40126837, 40127076-40127176,40127336-40127405,40127501-40127570, 40127970-40128026,40128110-40128177,40128258-40128338, 40128474-40128551,40128644-40128799,40128874-40128933, 40129253-40129317,40130002-40130059 Length = 365 Score = 26.6 bits (56), Expect = 7.5 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 260 NYLIMSCTSSSDNLTSLSCTINCMSNSVLGGVFT 159 N+LI+ +D L T+ C SN +LG +F+ Sbjct: 219 NHLILVNPPITDKHAKLPSTLACFSNFLLGEIFS 252 >07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371, 18577344-18577458,18578179-18578333,18578673-18580621, 18580691-18581372,18581550-18581621,18582558-18583199, 18583301-18583402,18585011-18585100 Length = 2192 Score = 26.2 bits (55), Expect = 9.9 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +1 Query: 85 SAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTE 183 + +K+++ + + L R++K M N PP+TE Sbjct: 813 TTEKVEELKNLVAPHMLRRLKKDAMQNIPPKTE 845 >04_03_0661 - 18468244-18469580,18469610-18469619 Length = 448 Score = 26.2 bits (55), Expect = 9.9 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = +1 Query: 1 KKHKREAS-LATVTYETVHYLQDTECKNQSAQKIQKFLEA-MKKYKLTRVEKLMMVNTPP 174 K+ ++EA LA E E + + ++ ++ EA + + KL EK ++ Sbjct: 93 KQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKRAAEAALNQKKLKEKEKKLLRKEKT 152 Query: 175 RTELDIQLIVQESEVRLSEEDVQ 243 R + +V ES LSE+DV+ Sbjct: 153 RLRNLVAPVVAESHFSLSEDDVE 175 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,074,830 Number of Sequences: 37544 Number of extensions: 177447 Number of successful extensions: 462 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 462 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 706675332 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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