Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1049X
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533...    42   2e-04
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260...    33   0.086
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760...    29   1.8  
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    28   2.4  
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268...    27   7.5  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    26   9.9  
04_03_0661 - 18468244-18469580,18469610-18469619                       26   9.9  

>12_02_0379 -
           18352103-18352246,18352994-18353146,18353258-18353375,
           18353785-18353792
          Length = 140

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +1

Query: 22  SLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLI 201
           ++A    +   YL  T   NQ+ + I +F+   + +KLT  +KL ++N  P +  D   +
Sbjct: 35  AVAASECKVYEYLLKTPACNQTRESINEFVTRCESFKLTNADKLNVINWRPSSAADAYAM 94

Query: 202 VQESEVRLSEED 237
           ++E   R S+++
Sbjct: 95  IEECGKRFSKDE 106


>12_01_0340 -
           2605770-2605916,2606353-2606595,2607260-2607531,
           2607691-2607733,2607822-2607899,2608026-2608085,
           2608272-2608331,2609440-2609577,2609655-2609767,
           2610333-2610569,2610867-2610918
          Length = 480

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -3

Query: 391 SLMQYLSLCKGISLHVGVF----PNRRQERLHRLHYVLELSVASRCWLTI 254
           S M Y++L  G   ++  F     N RQ+ LH++H +L +  A+RC+L I
Sbjct: 411 SFMGYMALALGKLSNLEGFVIQADNLRQQTLHQMHRILTIRQAARCFLAI 460


>01_06_1416 -
           37174913-37175006,37175299-37175441,37175932-37176027,
           37177125-37177364,37177456-37177812,37178020-37178097,
           37178387-37178434,37179406-37179675,37179954-37180054,
           37180452-37180605
          Length = 526

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 331 NRRQERLHRLHYVLELSVASRCWLTI 254
           N RQ+ LH+L  +L    A+RC+L+I
Sbjct: 451 NLRQQTLHQLRRILTTRQAARCFLSI 476


>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 103 KFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDII 252
           KFL+A  +Y    ++K   V+  PR +LD Q+ +   +VR     ++DII
Sbjct: 34  KFLKAELEYMQPALKK---VSNVPRDQLDEQVKIWAKDVRELSYSIEDII 80


>01_06_1821 +
           40126389-40126508,40126589-40126646,40126782-40126837,
           40127076-40127176,40127336-40127405,40127501-40127570,
           40127970-40128026,40128110-40128177,40128258-40128338,
           40128474-40128551,40128644-40128799,40128874-40128933,
           40129253-40129317,40130002-40130059
          Length = 365

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 260 NYLIMSCTSSSDNLTSLSCTINCMSNSVLGGVFT 159
           N+LI+     +D    L  T+ C SN +LG +F+
Sbjct: 219 NHLILVNPPITDKHAKLPSTLACFSNFLLGEIFS 252


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 85  SAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTE 183
           + +K+++    +  + L R++K  M N PP+TE
Sbjct: 813 TTEKVEELKNLVAPHMLRRLKKDAMQNIPPKTE 845


>04_03_0661 - 18468244-18469580,18469610-18469619
          Length = 448

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 1   KKHKREAS-LATVTYETVHYLQDTECKNQSAQKIQKFLEA-MKKYKLTRVEKLMMVNTPP 174
           K+ ++EA  LA    E        E + +  ++ ++  EA + + KL   EK ++     
Sbjct: 93  KQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKRAAEAALNQKKLKEKEKKLLRKEKT 152

Query: 175 RTELDIQLIVQESEVRLSEEDVQ 243
           R    +  +V ES   LSE+DV+
Sbjct: 153 RLRNLVAPVVAESHFSLSEDDVE 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,074,830
Number of Sequences: 37544
Number of extensions: 177447
Number of successful extensions: 462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)