Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1049X
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 30 0.82
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 30 0.82
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 29 1.4
SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71) 28 3.3
SB_17310| Best HMM Match : Filament (HMM E-Value=0.31) 28 3.3
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 27 4.4
SB_22118| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_14327| Best HMM Match : NHL (HMM E-Value=0) 27 5.8
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 27 7.7
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.9 bits (64), Expect = 0.82
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 4 KHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTE 183
KH+ +SLA + H DT K + ++K+ M++Y+L + E + + TE
Sbjct: 1113 KHETTSSLAQNRMKEAHQELDT-IKRDAKPLMEKYESTMREYELLKDEVEQLRSKLSTTE 1171
Query: 184 LDIQLIVQESEVRLSEED 237
L + +++ + E D
Sbjct: 1172 LQLDEEIRKRKALQKERD 1189
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 29.9 bits (64), Expect = 0.82
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 379 YLSLCKGISLHVGVFPNRRQERLHRLHYVLELSVASRCWLTI*LCLVRPLQIISPHSLVQ 200
++S+C HV VFPN R H ++ + SR + + + + + PH ++
Sbjct: 480 FMSICSLSRAHVDVFPNPCSCRCVSHHVLMSMCSTSRAHVNV-FPITCSCRCV-PHRVLM 537
Query: 199 SIVCPIQSWAECLP 158
SI P ++ + P
Sbjct: 538 SIFSPSRAHVDVFP 551
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 4 KHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKK 126
K + E L+ ++ ET HY + E +NQ Q++Q + + K
Sbjct: 947 KLETERQLSELSKETCHYKEKVEKQNQEIQELQSKINLLYK 987
>SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71)
Length = 279
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 236 SSSDNLTSLSCTINCMSNSVLGGVFTIINFSTLVSLYF 123
S D L +LS T+ ++ S++ + T+ TLV+LY+
Sbjct: 71 SIMDTLVTLSITVTLVTLSIMVTLVTLSIMDTLVTLYY 108
>SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)
Length = 458
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 133 LTRVEKLMMVNTPPRTELDIQLIV-QESEVRLSEEDVQDIIR*LANIYLQLIILIHNAIC 309
L E+L N + ELD QL++ QE E +L+E+ V++ ++ LQ + + AI
Sbjct: 400 LALAERLRAENRNEQAELDNQLVILQEKERQLAEKFVENF-----HVNLQAFVFLLAAIL 454
Query: 310 E 312
E
Sbjct: 455 E 455
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -2
Query: 326 TPRTTSQIALCIRIISCK*MLANYLIMSCTSSSDNLTSLSCTINCMSNSV 177
T R T ++ L ++SC + A +SC S + + T++SC + +S +V
Sbjct: 294 TTRRTVKLCLQPLVVSCSYLKALSTTVSCQSKALS-TTVSCQLKALSTTV 342
>SB_22118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 244 LVRPLQIISPHSLVQSIVCPIQSWAECL 161
LVRP+Q++ LVQ +V P+Q W + L
Sbjct: 379 LVRPVQLLV--RLVQLLVRPVQFWVQLL 404
>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
Length = 725
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 19 ASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNT 168
A L+ T+E V+Y Q+ ++ K L ++K K EK+ ++ T
Sbjct: 179 AVLSHKTHEFVYYKDHKPASPQTRERFNKILTQVEKKKKNLEEKMELLET 228
>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.1 bits (57), Expect = 5.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 384 CNTYHYVKEYHCT 346
CN +HY K Y CT
Sbjct: 81 CNDFHYFKRYQCT 93
>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 34 VTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTEL--DIQLIVQ 207
V+ + VH L T CKN + + +++Y ++ +N P+ L + Q ++
Sbjct: 226 VSGKNVHNLLITTCKNLNGKPSGVKKAELRRYTAKNIKNKAKINEDPKDALLREFQKEIE 285
Query: 208 ESEVRLSEE 234
+ + +L +E
Sbjct: 286 KLKAQLGDE 294
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 339 TPTCSDIPLHNDKYCIRLA 395
+P C+D+ H +K+C R+A
Sbjct: 40 SPRCNDLQSHREKFCKRVA 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,317
Number of Sequences: 59808
Number of extensions: 226734
Number of successful extensions: 745
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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