Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1049X
         (405 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51134-1|AAD05036.1|  148|Homo sapiens calcitonin gene-related p...    85   1e-16
BC105808-1|AAI05809.1|  148|Homo sapiens calcitonin gene-related...    85   1e-16
AF073792-1|AAC25992.1|  148|Homo sapiens CGRP-receptor component...    85   1e-16
BC040107-1|AAH40107.1|  115|Homo sapiens calcitonin gene-related...    78   1e-14
X97186-1|CAA65824.1| 1427|Homo sapiens E14 protein.                    31   1.1  
U58852-1|AAB02735.1| 1175|Homo sapiens NPAT protein.                   31   1.9  
D89854-1|BAA21367.1| 1427|Homo sapiens NPAT protein.                   31   1.9  
D83243-1|BAA11861.1| 1427|Homo sapiens NPAT protein.                   31   1.9  
BC050561-1|AAH50561.1| 1219|Homo sapiens NPAT protein protein.         31   1.9  
BC040356-1|AAH40356.1| 1373|Homo sapiens Similar to nuclear prot...    31   1.9  

>U51134-1|AAD05036.1|  148|Homo sapiens calcitonin gene-related
           peptide receptor component protein protein.
          Length = 148

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/90 (42%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +1

Query: 4   KHKR-EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRT 180
           KH   + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLT+ EKL ++N  P T
Sbjct: 34  KHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT 93

Query: 181 ELDIQLIVQESEVRLSEEDVQDIIR*LANI 270
            ++IQL+V+ESE RL+EE ++ ++  + +I
Sbjct: 94  AVEIQLMVEESEERLTEEQIEALLHTVTSI 123


>BC105808-1|AAI05809.1|  148|Homo sapiens calcitonin gene-related
           peptide-receptor component protein protein.
          Length = 148

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/90 (42%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +1

Query: 4   KHKR-EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRT 180
           KH   + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLT+ EKL ++N  P T
Sbjct: 34  KHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT 93

Query: 181 ELDIQLIVQESEVRLSEEDVQDIIR*LANI 270
            ++IQL+V+ESE RL+EE ++ ++  + +I
Sbjct: 94  AVEIQLMVEESEERLTEEQIEALLHTVTSI 123


>AF073792-1|AAC25992.1|  148|Homo sapiens CGRP-receptor component
           protein protein.
          Length = 148

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/90 (42%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
 Frame = +1

Query: 4   KHKR-EASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRT 180
           KH   + +L T+TYET+ Y+  T C++QS + +++FL A+K +KLT+ EKL ++N  P T
Sbjct: 34  KHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT 93

Query: 181 ELDIQLIVQESEVRLSEEDVQDIIR*LANI 270
            ++IQL+V+ESE RL+EE ++ ++  + +I
Sbjct: 94  AVEIQLMVEESEERLTEEQIEALLHTVTSI 123


>BC040107-1|AAH40107.1|  115|Homo sapiens calcitonin gene-related
           peptide-receptor component protein protein.
          Length = 115

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 35/87 (40%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
 Frame = +1

Query: 13  REASLATVT-YETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELD 189
           ++A+ A ++ YET+ Y+  T C++QS + +++FL A+K +KLT+ EKL ++N  P T ++
Sbjct: 4   KDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVE 63

Query: 190 IQLIVQESEVRLSEEDVQDIIR*LANI 270
           IQL+V+ESE RL+EE ++ ++  + +I
Sbjct: 64  IQLMVEESEERLTEEQIEALLHTVTSI 90


>X97186-1|CAA65824.1| 1427|Homo sapiens E14 protein.
          Length = 1427

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T LD + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSLD-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


>U58852-1|AAB02735.1| 1175|Homo sapiens NPAT protein.
          Length = 1175

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T +D + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSID-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


>D89854-1|BAA21367.1| 1427|Homo sapiens NPAT protein.
          Length = 1427

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T +D + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSID-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


>D83243-1|BAA11861.1| 1427|Homo sapiens NPAT protein.
          Length = 1427

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T +D + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSID-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


>BC050561-1|AAH50561.1| 1219|Homo sapiens NPAT protein protein.
          Length = 1219

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T +D + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSID-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


>BC040356-1|AAH40356.1| 1373|Homo sapiens Similar to nuclear
           protein, ataxia-telangiectasia locus protein.
          Length = 1373

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 58  LQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVN-TPPRTELDIQLIVQESEVRLSEE 234
           L +   + + A+ I KFL +     + +V K    N T P T +D + +   SE+ +SEE
Sbjct: 254 LSNKSLQEKLAENINKFLTSDNN--IAQVPKQTDNNPTEPETSID-EFLGLPSEIHMSEE 310

Query: 235 DVQDII 252
            +QDI+
Sbjct: 311 AIQDIL 316


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,805,468
Number of Sequences: 237096
Number of extensions: 1082955
Number of successful extensions: 2066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)