Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1049X
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical pr...    62   1e-10
Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    28   2.9  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z47745-2|CAA87664.1|  407|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    27   6.8  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z78413-1|CAB01663.1|  727|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    26   9.0  
U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z46935-6|CAL36509.1|  128|Caenorhabditis elegans Hypothetical
           protein M106.7 protein.
          Length = 128

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   KKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRT 180
           ++H+R   L+TV YET  YL  +    Q+   I + +  +  +KLT  E L ++N  P T
Sbjct: 31  QQHERCKQLSTVIYETKKYLNTSPAVTQNEAVICELIPKLAPFKLTGAETLQVINLRPST 90

Query: 181 ELDIQLIVQESEVRL-SEEDVQDII 252
             DIQL+++E+E R  SEED++ ++
Sbjct: 91  TADIQLLIEETEERFPSEEDLEKLV 115


>Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 40  YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 135
           +  V+ +QD + K QSA K+++ +E  K  KL
Sbjct: 35  FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66


>Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 40  YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 135
           +  V+ +QD + K QSA K+++ +E  K  KL
Sbjct: 35  FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66


>Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical
           protein C34C12.2 protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/84 (23%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = +1

Query: 1   KKHK-REASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTP-P 174
           K++K +E+ ++  + +  +  +  +   +  QK +K +  +K +K+ ++EK + +  P P
Sbjct: 244 KENKAKESQISNQSIQVRNSWKFADLFKKELQKSRKDVSEVK-WKIDKIEKKVGIKKPTP 302

Query: 175 RTELDIQLIVQESEVRLSEEDVQD 246
           R + D++LI  E ++ L  +  QD
Sbjct: 303 RKKPDVKLINPE-DISLMSDRTQD 325


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = +1

Query: 64  DTECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEED 237
           DT+ KN + +++ +F++ MKK  +T ++ L         ++DI  IV+E+E + +E+D
Sbjct: 850 DTKTKNLN-REVDRFMKKMKK--ITTLDDLAKDG-----KIDIDTIVEEAEKKKAEQD 899


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 79  NQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDIIR* 258
           N     +Q  +   ++++ +  E+     T     LD+QL+   S+    EED + ++R 
Sbjct: 411 NMIQDYVQMVMSVSREFQQSHREEASQAKTSELVSLDLQLLTYASKADQIEEDPRLMLRR 470

Query: 259 LA 264
           LA
Sbjct: 471 LA 472


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 70  ECKNQSAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTELD-IQLIVQESEVRLSEE 234
           +CK   A+  +K LEA +  K    ++L M+    + E D  +L  Q+S+++ +E+
Sbjct: 169 KCKQLEAELERKVLEAEESRKKFEEDRLAMLEQKSQLERDRAELARQKSDMKKNEQ 224


>AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical
           protein T28B4.4 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 295 HNAICEVVLGVDWGIHLRAVIFLYIMISIA 384
           +NA+  + LG  WGI L A I  ++++ ++
Sbjct: 125 YNALISLKLGWSWGITLAATILSFLLLLVS 154


>Z47745-2|CAA87664.1|  407|Caenorhabditis elegans Hypothetical
           protein T19H5.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 260 NYLIMSCTSSSDNLTSLSCTINCMSNSVLGGVFTII 153
           NY+ +S    +D   +++   NC  N +  G+F +I
Sbjct: 6   NYIKISIDEKNDRRDNVTANENCSRNRIKKGIFVLI 41


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -3

Query: 391 SLMQYLSLCKGISLHVGVFPNRRQERLHRLHYVLELSVASRC 266
           SLM + +LC  + L + V+  +R+++L  ++  L ++ +  C
Sbjct: 10  SLMMFTALCISLILMISVYTYKRKDQLPVVYIYLMIACSIGC 51


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical protein
            F48C1.1 protein.
          Length = 1064

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 154  MMVNTPPRTELDIQLIVQESEVRLSEEDVQDIIR*LANIYLQLIILIHNAIC 309
            MM N PP+ E DI+ I + S ++   +     +R L +    LI+  H  +C
Sbjct: 948  MMFNRPPKKEEDIEEIEEISNLKFPCDIQLLTVRPLEDNKQLLILYRHATVC 999


>AF016681-4|AAB66174.2|  276|Caenorhabditis elegans Hypothetical
           protein F22E5.8 protein.
          Length = 276

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 205 VQSIVCPIQSWAECLPSLI 149
           +  IVCP Q  + C+PSLI
Sbjct: 236 IDCIVCPFQKISMCVPSLI 254


>Z78413-1|CAB01663.1|  727|Caenorhabditis elegans Hypothetical
           protein T01C3.1 protein.
          Length = 727

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 1   KKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTRV 144
           KK + +  +AT+TY+T H  + ++       K +   + ++ YK+T V
Sbjct: 175 KKMEEDCRMATITYKTAH-PKPSKVLTSGTPKSKAKAKTIEGYKVTSV 221


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 392 KPYAILIIM*RNITARRCIPQSTPRTTSQ-IALCIRIISCK*MLANYLIMSCTSSSDNLT 216
           +PY+   ++   +     I + T ++T + +  CI + +CK +  N L  SC  SS +  
Sbjct: 267 RPYSFEKMITSKLVNSSIIKEITNQSTEKCLQKCIDMENCKSVNYNVLTRSCLLSSTS-K 325

Query: 215 SLSCTIN 195
           S+S T++
Sbjct: 326 SISATVS 332


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 310 HRLHYVLELSVASRCWLTI*LCLVRPLQIISPHS 209
           H LH + + S     WL + + L+R L I +P S
Sbjct: 115 HLLHLLKDYSRRCSTWLMVFIALIRTLMIRNPMS 148


>U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical
           protein F41H10.5 protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 194 CMSNSVLGGVFTIINFSTLVSLYFF-IASRNF*IFWAL 84
           C  ++   GVF ++ +S ++S +FF I S+     WA+
Sbjct: 177 CGLSTQFPGVFRVVVYSNIISFFFFRIVSQILWTNWAI 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,696
Number of Sequences: 27780
Number of extensions: 178062
Number of successful extensions: 473
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)