Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1049X
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim...    30   0.51 
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim...    30   0.51 
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    29   0.89 
At1g08320.1 68414.m00920 bZIP family transcription factor contai...    28   2.7  
At1g02510.1 68414.m00202 outward rectifying potassium channel, p...    27   4.8  
At3g09780.1 68416.m01161 protein kinase family protein contains ...    26   8.3  

>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 133 LTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDI 249
           + R   ++ +N    TE D+QL V+ +  RLSEE ++ I
Sbjct: 422 ICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVI 460


>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 133 LTRVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDI 249
           + R   ++ +N    TE D+QL V+ +  RLSEE ++ I
Sbjct: 422 ICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVI 460


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 85  SAQKIQKFLEAMKKYKLTRVEKLMMVNTPPRTE 183
           SA+K+++  + +  + L R++K  M N PP+TE
Sbjct: 881 SAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTE 913


>At1g08320.1 68414.m00920 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 481

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 331 NRRQERLHRLHYVLELSVASRCWLTI 254
           N RQ+ +H+L  +L +  A+RC+L I
Sbjct: 408 NLRQQTVHQLRRILTVRQAARCFLVI 433


>At1g02510.1 68414.m00202 outward rectifying potassium channel,
           putative (KCO4) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 284

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 139 RVEKLMMVNTPPRTELDIQLIVQESEVRLSEEDVQDIIR*LANI 270
           R+++  ++  PP     I   ++ES  R+SE+D++ I+R   N+
Sbjct: 234 RIDRTTVMKLPPSESEFIVFKLRESG-RISEDDIKQIVREFENL 276


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -3

Query: 391 SLMQYLSLCKGISLHVGVFPNRRQERLHRLHYVLELSVASRCWLTI*LCLVRPLQIISPH 212
           SL Q  S      LH   FP++   +L RL  ++  S AS   + I  C V P  + SP+
Sbjct: 410 SLCQNSSCSDICKLHNSNFPDKHWHQLQRLVLIIG-SCASALLIIIIGCCVVPRIVTSPN 468


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,417,203
Number of Sequences: 28952
Number of extensions: 153756
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)