Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E48738 Cluster: PREDICTED: similar to fibropelli...    59   1e-07
UniRef50_UPI0000E49045 Cluster: PREDICTED: similar to ankyrin 2,...    56   7e-07
UniRef50_UPI0000E49762 Cluster: PREDICTED: hypothetical protein;...    48   2e-04
UniRef50_UPI0000E46A20 Cluster: PREDICTED: hypothetical protein;...    45   0.002
UniRef50_Q57UU2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_A7S3Y3 Cluster: Predicted protein; n=2; Nematostella ve...    35   1.4  
UniRef50_Q6BZZ5 Cluster: Yarrowia lipolytica chromosome F of str...    33   7.7  
UniRef50_Q5KKC3 Cluster: Expressed protein; n=2; Filobasidiella ...    33   7.7  

>UniRef50_UPI0000E48738 Cluster: PREDICTED: similar to fibropellin
           III, partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to fibropellin III, partial -
           Strongylocentrotus purpuratus
          Length = 288

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 27/62 (43%), Positives = 41/62 (66%)
 Frame = -3

Query: 476 EVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIE 297
           E+ K +  LKGS + I E LTK+  D+F  A+ H  VK  WT+DG++IVLLP  + + I+
Sbjct: 217 EILKVRRKLKGSGIGIDEALTKTNQDLFYAAKQHEKVKEAWTSDGRVIVLLPATRGNTIK 276

Query: 296 QM 291
           ++
Sbjct: 277 RV 278


>UniRef50_UPI0000E49045 Cluster: PREDICTED: similar to ankyrin
            2,3/unc44, partial; n=3; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to ankyrin 2,3/unc44,
            partial - Strongylocentrotus purpuratus
          Length = 2259

 Score = 56.0 bits (129), Expect = 7e-07
 Identities = 26/61 (42%), Positives = 39/61 (63%)
 Frame = -3

Query: 476  EVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIE 297
            E+ K +  LKGS + I E LTK+  D+   A+ H  VK  WT+DG++IVLLP  + + I+
Sbjct: 2199 EILKVRRKLKGSGIGIDEALTKTNQDLLYAAKQHEKVKEAWTSDGRVIVLLPATRGNTIK 2258

Query: 296  Q 294
            +
Sbjct: 2259 R 2259


>UniRef50_UPI0000E49762 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 257

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = -3

Query: 491 FEAMQEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNK 312
           +   Q + K++  LK + + I+E LTK  +D+  + RS   V   W+ DG+I V L  N 
Sbjct: 181 YRVCQSILKSRRRLKNTGISINEDLTKPNYDILKQTRSSSNVTAAWSQDGRIFVTLASNS 240

Query: 311 RSKIEQM 291
            + I+++
Sbjct: 241 GTNIKKL 247


>UniRef50_UPI0000E46A20 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 242

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -3

Query: 491 FEAMQEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNK 312
           +   QEV  N+  L G R  I E LTK+  D+    R+   VK  WT DG+I +   +NK
Sbjct: 170 YRKRQEVIPNRRKLAGKRKSIQEDLTKANQDLLAHVRTSEKVKAAWTRDGRIPMTDKNNK 229

Query: 311 RSKI 300
           +  I
Sbjct: 230 KHLI 233


>UniRef50_Q57UU2 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 379

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -3

Query: 497 PEFEAMQEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPD 318
           P  +   +VWK    L     ++SE  TK+ +++F+E  SHF  K     DG ++V+   
Sbjct: 276 PISDVTAQVWKQPDRLSFGGSMVSEENTKAVYNLFMETTSHF--KETRKLDGTLVVMTSA 333

Query: 317 NKRS 306
           N  S
Sbjct: 334 NDAS 337


>UniRef50_A7S3Y3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 262

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 449 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 270
           K  ++ ++E LTK R D      S   + + WT DG I V L  +K    E +  L+ LK
Sbjct: 193 KKDKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 252


>UniRef50_Q6BZZ5 Cluster: Yarrowia lipolytica chromosome F of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome F of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 713

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 326 LPDNKRSKIEQMFELQHL--KTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQS 174
           LPD+ R  +  +F L H+   TK P  K R++LL H+  L T+   + +  QS
Sbjct: 326 LPDSSRETMSDVFGLHHVGPSTK-PGPKSREQLLDHIKTLRTSHDPYVSHDQS 377


>UniRef50_Q5KKC3 Cluster: Expressed protein; n=2; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 778

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = -3

Query: 326 LPDNKRSKIEQMFELQHLKTKFPSLKKRKE--------LLSHLGNLMTNPRRHQNQR-QS 174
           +P+ + +K+       H   K PSL   K+        L S   +  + PRRH+ +R +S
Sbjct: 536 IPEPQEAKLVMAHNRSHTSPKTPSLSHAKQHDHVQPSPLASKKSSTPSTPRRHKQEREES 595

Query: 173 EKSARGRLVESSMAV 129
            +S R + + SS A+
Sbjct: 596 SRSRRSKPISSSKAL 610


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,092,065
Number of Sequences: 1657284
Number of extensions: 12513084
Number of successful extensions: 32742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32730
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)