Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1048
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 27 1.7
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.0
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 26 5.3
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 5.3
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.0
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 25 7.0
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 293 MFELQHLKTKFPSLKKRKELLSHLGNLMTNPRR----HQNQRQS 174
+ E LKT PSL +R+EL L + MT PR QN+RQS
Sbjct: 47 LLEQYFLKTPKPSLIERQELSKKLKSSMT-PRELQIWFQNKRQS 89
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 285 TSASENQVSLAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRRK 142
TSA+E +K G S K ++P T P+ + K TT K
Sbjct: 374 TSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKETTGTK 421
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 282 SASENQVSLAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRR 145
S E++ K + P+S +SH E K+A K +++ K ++R
Sbjct: 591 SKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKR 636
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 314 KRSKIEQMFELQHLKTKFPSLKKRKELLSHL 222
K++ + QM E+Q K LK+ E+ SHL
Sbjct: 788 KKNMLAQMIEIQKFKISIKFLKEDLEMDSHL 818
Score = 25.0 bits (52), Expect = 9.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 311 RSKIEQMFELQ-HLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSAR-GRLVES 141
+ +E LQ +L++ FPS KE S L +N R H N + R G+ VES
Sbjct: 809 KEDLEMDSHLQDYLRSVFPSSVMGKENASEDTILESNFRNHSNPSVRRSNLRVGKTVES 867
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 282 SASENQVSLAQKAQGAPQSSGKSHDEPKT 196
S +N+++ +KA GAP + KSH++ T
Sbjct: 314 SKEQNRIA-KEKASGAPLTKSKSHNDTST 341
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -3
Query: 524 ISLGLFXXXPEFEAMQEVWKNKTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTD 345
+ +G +F + W+N L S+ I L D RS + T D
Sbjct: 177 VYVGALFFREKFTNLGHTWQNSILFDKSKKSILTCLHYFPRDPSQPFRSQASL----TLD 232
Query: 344 GKIIVLLPDNKRS 306
GK+I +L DN+ S
Sbjct: 233 GKLIAVLLDNEYS 245
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 537 LTDSKQLSPLLCNQPPSFGWLIYPQLLLL 623
+ D+K+L PL Q W +Y LLL+
Sbjct: 77 MQDAKKLDPLTPKQESKLKWKLYIYLLLM 105
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 287 ELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSMA 132
E + LK F KK LSHL L + RH+ + + RL S ++
Sbjct: 134 EAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDKLELIMRRLENSQIS 185
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 41 LIEIMFKNALQLPRIDN*VFSVTSMNKFKIPPYYFRRVVLLPISR 175
L++ FKN ++ ++ N F +++ +PP + + +L R
Sbjct: 104 LLDDCFKNRIEYAKLQNYNFEFVNVSSLVVPPVWGKMPAILQTMR 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,490
Number of Sequences: 5004
Number of extensions: 52539
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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