Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    34   0.083
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109...    29   2.4  

>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
 Frame = -3

Query: 497 PEFEAMQ-EVWKNKTLLKGSRVIISEFLTKSRHDVFLEA--RSHFGVKRCWTTDGKIIVL 327
           P+ + M+ E+WKN    K  +     F    RHD  L +      G  +  T+D   +V 
Sbjct: 356 PDMDKMEFELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVP 415

Query: 326 LPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGN 216
             +  +S +E+  EL H  ++       K LL    N
Sbjct: 416 YSEEYKSSLEKAAELLHKASECSDSPSLKNLLKTKAN 452


>03_01_0138 -
           1089063-1089266,1089590-1089671,1089937-1090390,
           1091094-1091634
          Length = 426

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 273 ENQVSLAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 151
           +N V+LAQ     P  S    DEP  A +S + R++G   T
Sbjct: 177 KNSVALAQPISFNPAQSASIVDEPAPAVRSVSMRDMGTEMT 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,865
Number of Sequences: 37544
Number of extensions: 341996
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)