Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1048
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 35 0.049
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 35 0.049
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 30 1.8
SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2) 30 1.8
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5) 29 2.4
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 29 2.4
SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 29 4.2
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 28 7.4
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 35.1 bits (77), Expect = 0.049
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 449 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 270
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 193 KKDKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 252
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 35.1 bits (77), Expect = 0.049
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 449 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 270
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 232 KKEKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 291
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 452 LKGSRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFEL 282
L + + ISE LT + +F L + F K WT GK VL+ ++ S Q+ L
Sbjct: 297 LADNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGK--VLIRKDEHSPAIQIKSL 354
Query: 281 QHL 273
QHL
Sbjct: 355 QHL 357
>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 275 LKTK 264
LK +
Sbjct: 183 LKQR 186
>SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 637 RCHRPSNSNC--GYINQPNEGGWLHRRGLNCLLSV 539
R H PS + G+ ++PN G W+ R C+L V
Sbjct: 106 RGHGPSGNRSAPGHFDRPNNGSWIQRGPPKCILHV 140
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 275 LKTK 264
LK +
Sbjct: 183 LKQR 186
>SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 27 NKIYISESLSPGNRELFKAELSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 86
Query: 275 LKTK 264
LK +
Sbjct: 87 LKQR 90
>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
Length = 280
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 201 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 260
Query: 275 LKTK 264
LK +
Sbjct: 261 LKQR 264
>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
Length = 270
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D + I + +L H
Sbjct: 191 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDGQAVLISKSQDLLH 250
Query: 275 LKTK 264
LK +
Sbjct: 251 LKQR 254
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = -3
Query: 449 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKI----EQMFEL 282
K + ++E LTK R D + + WT D I V L +K +I Q+ +L
Sbjct: 735 KKEKFRVNEDLTKGRLDAIKAINVKLDIYKLWTIDVTIQVRLNKDKAKEIIHSLRQLKDL 794
Query: 281 QHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQ 177
Q L K + + E + +L + P +QN +
Sbjct: 795 QQLIEKVLDTENQNE--QNTEHLNSMPFSNQNNNE 827
>SB_25039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 279 ASENQVSLAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKR 157
ASEN +S + A+ Q++GK E K + EIGKR
Sbjct: 180 ASENVISYYKYAEEKYQNAGKPRSEFKEHARQFTFEEIGKR 220
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -3
Query: 296 QMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESS 138
Q ++QH++ + L++++ L HL RRHQ Q+Q ++ + + +E S
Sbjct: 281 QQQQVQHMQQQ--RLQQQQLLQQHLQRQQQQQRRHQQQQQQQQLHQQQRLEQS 331
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 443 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 276
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + + H
Sbjct: 150 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNKDSQAVLISKSQDSLH 209
Query: 275 LKTK 264
LK +
Sbjct: 210 LKQR 213
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 252 QKAQGAPQSSGKSHDEPKTAPKSA 181
Q AQG Q GK H EP P +A
Sbjct: 764 QLAQGLAQEPGKQHQEPARTPVAA 787
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,471
Number of Sequences: 59808
Number of extensions: 389328
Number of successful extensions: 1125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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