Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004285-1|AAH04285.1|  498|Homo sapiens TCHP protein protein.         31   2.6  
AY007230-1|AAG12971.1|  498|Homo sapiens tumor suppressor protei...    31   2.6  
AK092736-1|BAC03960.1|  498|Homo sapiens protein ( Homo sapiens ...    31   2.6  
U82467-1|AAB53699.1|  561|Homo sapiens tub homolog protein.            30   6.0  
BC075032-1|AAH75032.1|  561|Homo sapiens tubby homolog (mouse) p...    30   6.0  
BC075031-1|AAH75031.1|  561|Homo sapiens tubby homolog (mouse) p...    30   6.0  
AL132874-5|CAI42607.1|  451|Homo sapiens minichromosome maintena...    30   6.0  

>BC004285-1|AAH04285.1|  498|Homo sapiens TCHP protein protein.
          Length = 498

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = -3

Query: 314 KRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSM 135
           ++ +I++  E Q+ + +  SLK R++L+ +L  +    RR + + +  KSAR + +E+ +
Sbjct: 383 RQQQIQEKIE-QNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQV 441

Query: 134 A 132
           A
Sbjct: 442 A 442


>AY007230-1|AAG12971.1|  498|Homo sapiens tumor suppressor protein
           protein.
          Length = 498

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = -3

Query: 314 KRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSM 135
           ++ +I++  E Q+ + +  SLK R++L+ +L  +    RR + + +  KSAR + +E+ +
Sbjct: 383 RQQQIQEKIE-QNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQV 441

Query: 134 A 132
           A
Sbjct: 442 A 442


>AK092736-1|BAC03960.1|  498|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35417 fis, clone SMINT2000747. ).
          Length = 498

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 17/61 (27%), Positives = 37/61 (60%)
 Frame = -3

Query: 314 KRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSARGRLVESSM 135
           ++ +I++  E Q+ + +  SLK R++L+ +L  +    RR + + +  KSAR + +E+ +
Sbjct: 383 RQQQIQEKIE-QNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQV 441

Query: 134 A 132
           A
Sbjct: 442 A 442


>U82467-1|AAB53699.1|  561|Homo sapiens tub homolog protein.
          Length = 561

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = -3

Query: 365 KRCWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQN 186
           ++ W    +I  +L D  R+  +Q  + Q    +    KKR+E L    N    P R + 
Sbjct: 57  RKYWKEGREIARVLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRP-RSRR 115

Query: 185 QRQSEKSARGRLVESSMAVS 126
            RQSE+ A   LVES ++ S
Sbjct: 116 ARQSEEQA--PLVESYLSSS 133


>BC075032-1|AAH75032.1|  561|Homo sapiens tubby homolog (mouse)
           protein.
          Length = 561

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = -3

Query: 365 KRCWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQN 186
           ++ W    +I  +L D  R+  +Q  + Q    +    KKR+E L    N    P R + 
Sbjct: 57  RKYWKEGREIARVLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRP-RSRR 115

Query: 185 QRQSEKSARGRLVESSMAVS 126
            RQSE+ A   LVES ++ S
Sbjct: 116 ARQSEEQA--PLVESYLSSS 133


>BC075031-1|AAH75031.1|  561|Homo sapiens tubby homolog (mouse)
           protein.
          Length = 561

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = -3

Query: 365 KRCWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQN 186
           ++ W    +I  +L D  R+  +Q  + Q    +    KKR+E L    N    P R + 
Sbjct: 57  RKYWKEGREIARVLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRP-RSRR 115

Query: 185 QRQSEKSARGRLVESSMAVS 126
            RQSE+ A   LVES ++ S
Sbjct: 116 ARQSEEQA--PLVESYLSSS 133


>AL132874-5|CAI42607.1|  451|Homo sapiens minichromosome maintenance
           complex component 9 protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -3

Query: 308 SKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSE--KSARG--RLVES 141
           SK E+++ ++ +KT F  ++  +  LS +GN +   R +Q QRQS+   +AR   RL+ES
Sbjct: 356 SKSEKLWSMEKMKTYFCLIRNLQPTLSDVGNQVL-LRYYQMQRQSDCRNAARTTIRLLES 414


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,341,349
Number of Sequences: 237096
Number of extensions: 1968132
Number of successful extensions: 3675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3675
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)