Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    29   2.8  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    29   3.7  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    29   3.7  
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    28   6.5  
U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...    28   6.5  
Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   8.6  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   8.6  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   8.6  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical
           protein C30H6.6 protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 391 KKTS*RDLVRNSEMMTLEPFRSVLFFHTSCIASNSGXXLNRPRLIG 528
           + T+ +DLV   E+   +PFR  +F  TS +  +SG  L  PR++G
Sbjct: 64  RHTTWKDLVELYEIA--KPFRKWIFLGTSFMVVSSGIFLIIPRILG 107


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 272  KTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSAR 159
            +T  PS KKR +L  +  N  + P RHQ     +K+ +
Sbjct: 1053 RTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 272  KTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSAR 159
            +T  PS KKR +L  +  N  + P RHQ     +K+ +
Sbjct: 1053 RTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = -3

Query: 482  MQEVWKN---KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDN 315
            MQ+V+ +   KT++  S + + EFL + R    L+ +    ++  C      I  +L DN
Sbjct: 1284 MQKVYLDHYMKTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDN 1340

Query: 314  KRSKIEQMFELQHLKTK 264
            ++ K E MFELQ +K +
Sbjct: 1341 RQLKDEMMFELQRVKQR 1357


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = -3

Query: 482  MQEVWKN---KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDN 315
            MQ+V+ +   KT++  S + + EFL + R    L+ +    ++  C      I  +L DN
Sbjct: 1284 MQKVYLDHYMKTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDN 1340

Query: 314  KRSKIEQMFELQHLKTK 264
            ++ K E MFELQ +K +
Sbjct: 1341 RQLKDEMMFELQRVKQR 1357


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 246 AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 151
           A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 56  APNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 246 AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 151
           A  A QS  K  ++PK  PK   +++ GK+ T
Sbjct: 56  APNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87


>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 359 CWTTDGKIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSH-LGNLMTNPRRHQNQ 183
           C      I+ +LPD +  K   +F L +L T   +     +L+SH L   MTN +  + +
Sbjct: 176 CIDNPNVIVPILPDAEGQKKSLVFFLMYLFTMATASILSAQLISHLLSKRMTN-QSDKTK 234

Query: 182 RQSEKSARGRLVESSMAVS*T 120
           +  +K  R  L +  + +S T
Sbjct: 235 KMHQKFNRRSLFQVLIDISFT 255


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 284  LQHLKTKFP--SLKKRKELLSHLGNLMTNPRRHQNQRQSEKSAR 159
            + HLKTK    SLK+ +   S     MT  RR Q Q   +++ R
Sbjct: 1820 MPHLKTKIEELSLKEEEHATSQTIMTMTRTRRKQKQEMVKRAVR 1863


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 284  LQHLKTKFP--SLKKRKELLSHLGNLMTNPRRHQNQRQSEKSAR 159
            + HLKTK    SLK+ +   S     MT  RR Q Q   +++ R
Sbjct: 1829 MPHLKTKIEELSLKEEEHATSQTIMTMTRTRRKQKQEMVKRAVR 1872


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 353  TTDGKIIVLLP-DNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTN 204
            +T G I+ L+P D + S + ++  ++      PSL    ++L H+G++  N
Sbjct: 1703 STTGDILSLIPLDREESSLHELL-IEAKDAGIPSLSATSKILIHVGDINDN 1752


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 270 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 434
           FQ     HL   LT  ++ E  + F P  CP  L  +   G    IM+  G KF ND
Sbjct: 683 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 739


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 270 FQMLKFKHL-FNLTAFIIREKDDYF-PICCPAALNAEMRAGLQKDIMT*FGQKF*ND 434
           FQ     HL   LT  ++ E  + F P  CP  L  +   G    IM+  G KF ND
Sbjct: 159 FQSFCGNHLKLLLTPAVVEETFNIFGPNLCPMLLGLKSAMGKLSTIMSLSGNKFLND 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,142
Number of Sequences: 27780
Number of extensions: 298611
Number of successful extensions: 707
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)