Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.62 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 177 EREIGKRTTRRK*YGGILNL 118
           ++E+ +R +RRK YGG+ +L
Sbjct: 257 QKELVRRDSRRKNYGGVYHL 276



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +1

Query: 610 NCCCWVC 630
           +CCCW C
Sbjct: 10  SCCCWCC 16


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 28/89 (31%), Positives = 40/89 (44%)
 Frame = -3

Query: 341 KIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKRKELLSHLGNLMTNPRRHQNQRQSEKSA 162
           KII  LP +K SKI+ +     L T++        L   L   M N     +   SE++ 
Sbjct: 278 KIIPTLPSDKLSKIQTL----KLATRYIDF-----LFQVLHCNMENTEGADDA--SERNP 326

Query: 161 RGRLVESSMAVS*TYS*M*H*KLSYLFEV 75
           R  ++ +    S + S M H KLSY F V
Sbjct: 327 RSAVLAAREITSSSCSYMAHEKLSYAFSV 355


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 229 VIWEIS*RTQDGTKISGRARNRQEDDSSKVVWRYLELI 116
           ++ EI     D   I+  A+N+ + +S +  W+Y+ ++
Sbjct: 508 LVREIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAMV 545


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 386 PPKRHHDVIWSEILK 430
           PP  H   +W E+LK
Sbjct: 149 PPYSHQTDVWVELLK 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,420
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)