Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1048
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17240.1 68417.m02592 expressed protein                             30   1.5  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    29   2.6  
At3g44940.1 68416.m04842 expressed protein                             29   2.6  
At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    29   3.4  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   7.9  

>At4g17240.1 68417.m02592 expressed protein
          Length = 200

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 341 KIIVLLPDNKRSKIEQMFELQHLKTKFPSLKKR 243
           K  VL PD+  S+I QM EL   +   P+L+K+
Sbjct: 41  KSAVLFPDSMNSQINQMQELNQAREIIPNLQKQ 73


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 162 CRFLALPLILVPSWVRHEISQMTEELLALFERGKLGF 272
           C F+ + LIL+P+ + H+ S    + +  FE  + G+
Sbjct: 6   CSFIVILLILLPTTISHDYSDALTKSILFFEGQRSGY 42


>At3g44940.1 68416.m04842 expressed protein
          Length = 250

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -3

Query: 311 RSKIEQMFELQHLKTKFPSLKKRKELL---SHL--GNLMTNPRRHQNQRQSEK 168
           R + EQ+  L+ + TK  +LK+R E L   +HL   NL+   ++ QNQ Q ++
Sbjct: 45  RKRDEQLIHLEDVLTK--TLKERDEALEKYNHLLLNNLLLQQKQQQNQNQKQE 95


>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 204 VRHEISQMTEELLALFERGKLGFQMLKFKH--LFNLTAFIIREKDDYFPICCPAALNAEM 377
           +++ I+Q  E  L   +R   G ++L++    L +   F  +E +DYFP CCP  L   +
Sbjct: 113 MKNRITQEEEYALNTLQR-IFGSKILEYLIFLLIDGEKFEAKEFEDYFPECCPEFLMRVL 171

Query: 378 R 380
           R
Sbjct: 172 R 172


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 419 LTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDN 315
           L +S+  +FLE   HF   R     GK+ +L+ +N
Sbjct: 79  LLESQESLFLEENGHFSNARGSHNSGKLCILIREN 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,876,660
Number of Sequences: 28952
Number of extensions: 278848
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)