BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1047 (508 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 2.4 AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 2.4 DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 22 3.2 AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 3.2 L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 22 4.2 DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 4.2 DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 4.2 AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 5.6 DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 7.3 DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 7.3 DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 9.7 DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 9.7 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.7 >AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex determiner protein. Length = 400 Score = 22.6 bits (46), Expect = 2.4 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +3 Query: 327 TRNTLYFNTIYSNY*NHQKYYS 392 + T++ N Y+NY N + YY+ Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329 >AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase protein. Length = 588 Score = 22.6 bits (46), Expect = 2.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 315 SYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSST 413 +Y+S NTL + + SN + K+ + N SST Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332 >DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5 protein. Length = 104 Score = 22.2 bits (45), Expect = 3.2 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = -3 Query: 476 LVPVLLNNVINKCPAIMLAVNRT 408 L+P +LNN N+C + + + T Sbjct: 56 LLPEVLNNHCNRCTSRQIGIANT 78 >AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex determiner protein. Length = 428 Score = 22.2 bits (45), Expect = 3.2 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +3 Query: 297 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTWN 401 + ++ Y YN N N +NY N+ K YY+ N Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360 >L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. Length = 382 Score = 21.8 bits (44), Expect = 4.2 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = -2 Query: 114 NVLNSLCNFFEMKFHIIKCRFGINQN 37 NV +C+ + ++F + ++GI QN Sbjct: 48 NVPTFMCHKYGLRFEEVSEKYGILQN 73 >DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.8 bits (44), Expect = 4.2 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 389 N KY S+ +YN+ N Y N +NY K Y Sbjct: 88 NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120 >DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.8 bits (44), Expect = 4.2 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 389 N KY S+ +YN+ N Y N +NY K Y Sbjct: 88 NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120 >AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein protein. Length = 411 Score = 21.4 bits (43), Expect = 5.6 Identities = 8/18 (44%), Positives = 10/18 (55%) Frame = +3 Query: 315 SYNSTRNTLYFNTIYSNY 368 S+ T N YF+ Y NY Sbjct: 209 SWRITHNFFYFDPRYGNY 226 >DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex determiner protein. Length = 186 Score = 21.0 bits (42), Expect = 7.3 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIY 359 N KY + +YN+ LY+N Y Sbjct: 95 NYKYNYNNNNYNNNCKKLYYNINY 118 >DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.0 bits (42), Expect = 7.3 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIY 359 N KY + +YN+ LY+N Y Sbjct: 95 NYKYNYNNNNYNNNCKKLYYNINY 118 >DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.0 bits (42), Expect = 7.3 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIY 359 N KY + +YN+ LY+N Y Sbjct: 95 NYKYNYNNNNYNNNCKKLYYNINY 118 >DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 21.0 bits (42), Expect = 7.3 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +3 Query: 288 N*KYKSHIYSYNSTRNTLYFNTIY 359 N KY + +YN+ LY+N Y Sbjct: 95 NYKYNYNNNNYNNNCKKLYYNINY 118 >DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 20.6 bits (41), Expect = 9.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 333 NTLYFNTIYSNY*NHQKYYST 395 ++L N YSNY N+ Y+T Sbjct: 83 SSLSNNYKYSNYNNYNNNYNT 103 >DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex determiner protein. Length = 179 Score = 20.6 bits (41), Expect = 9.7 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = +3 Query: 312 YSYNSTRNTLYFNTIY 359 Y+YN+ LY+N Y Sbjct: 98 YNYNNNCKKLYYNINY 113 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 20.6 bits (41), Expect = 9.7 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -3 Query: 404 KVPGRIIFLMVSIIT 360 KV R+ LM+S+IT Sbjct: 635 KVADRVSMLMISVIT 649 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 107,639 Number of Sequences: 438 Number of extensions: 1907 Number of successful extensions: 21 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 21 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 13986774 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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