Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1046X
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z118 Cluster: Putative uncharacterized protein; n=2; ...    34   2.0  
UniRef50_A5K7K0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.0  

>UniRef50_Q4Z118 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 579

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -2

Query: 384 LTISFYKIQHFT*TSKQLFVIYIKFAQNVYIKICLIIIVT 265
           L + FYKI++F    K L ++++++ +N  + IC   I+T
Sbjct: 127 LRLLFYKIENFYIQKKHLLLLFLRYIKNFLLNICNSTIIT 166


>UniRef50_A5K7K0 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 2652

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -2

Query: 372  FYKIQHFT*TSKQLFVIYIKFAQNVYIKICLIIIVT 265
            FY+I+ F+   K L ++++++ +N  + IC  I++T
Sbjct: 917  FYRIESFSTQKKHLLMVFLRYIKNFLLNICSSILIT 952


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,297,454
Number of Sequences: 1657284
Number of extensions: 6821995
Number of successful extensions: 11019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11019
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)