Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1046X
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               29   1.6  
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)            27   6.4  
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  
SB_32320| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 406 HCVRTHCANDIIL*DTTLHINIKTTICHLHKICSKCL 296
           H   T C + I +  TT H +I  T CH H   +KCL
Sbjct: 448 HITVTTCHDHIPV--TTCHYHITVTTCHNHITVTKCL 482



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 406 HCVRTHCANDIIL*DTTLHINIKTTICHLHKICSKCLY 293
           H   T C N I +  TT H +I  T CH H   + C Y
Sbjct: 430 HTTVTKCLNHITV--TTCHNHITVTTCHDHIPVTTCHY 465



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 361 TTLHINIKTTICHLHKICSKCL 296
           TT H +I  T CH H   +KCL
Sbjct: 416 TTCHNHITVTTCHNHTTVTKCL 437



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 406 HCVRTHCANDIIL*DTTLHINIKTTICHLHKICSKC 299
           H   T C N I +  TT H +I  T CH H   + C
Sbjct: 475 HITVTKCLNHITV--TTCHNHITVTTCHDHIPVTTC 508


>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
          Length = 646

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   VSVTVSEFKCAIFHSRTQRYQCSCNKLM 85
           ++V +S + CA +H    RY  SCN+LM
Sbjct: 501 INVDLSRY-CACYHISFSRYVKSCNQLM 527


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 389 MCTHTVLGPSAPHSLHTTARLIHLLCKD 472
           +C+ + +  S  H+L  TAR+ H +C D
Sbjct: 99  LCSQSCVWESHCHALTCTARICHQICSD 126


>SB_32320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 94  KPEHKFITRTLISLSSGMENSTLKFTNC 11
           K +HK+I R+L  +++    + L FT C
Sbjct: 48  KEDHKWIARSLFKVNASSGKAELDFTRC 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,860
Number of Sequences: 59808
Number of extensions: 229594
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)