Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1046X
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alph...    28   3.2  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    27   7.5  

>Z74043-9|CAA98540.1|  524|Caenorhabditis elegans Hypothetical
           protein T19B10.7 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 361 TTLHINIKTTICHLHKICSKCLY*NMSNYYCNL*LVQPTLQII 233
           T LH N+  T+  +H +    +   +S+ YCN  + Q T  +I
Sbjct: 87  TVLHENLNNTVWTIHVLVKVQILHKLSDVYCNRVISQTTRLLI 129


>AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alpha 1
           protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 361 TTLHINIKTTICHLHKICSKCLY*NMSNYYCNL*LVQPTLQII 233
           T LH N+  T+  +H +    +   +S+ YCN  + Q T  +I
Sbjct: 87  TVLHENLNNTVWTIHVLVKVQILHKLSDVYCNRVISQTTRLLI 129


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 405 TVCVHIALTISFYKIQHFT*TSKQLFVIYIKF--AQNV-YIKICLIIIVTSN*YSQLY 241
           ++C+ I L I F+  +H T  S+   V+ +++  A+NV  ++  +  +V  N  S L+
Sbjct: 160 SICICICLVILFFVNRHLTFNSRHKSVLTVRYQLAENVKALRTFVPFVVVDNCLSVLF 217


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 15  LVNLSVLFSIPELNDINVLVINLCSGFKKMLLMYN*N*TLCD*NAMFRSIFILYFLP--L 188
           LV +S+L S+  LN  +   I   + FK      + N  L D  A+  ++F+LYF P  L
Sbjct: 11  LVPISILGSV--LNWSSFYTIRKLASFKHSFGYLSSNQALAD--ALHSTVFLLYFCPMAL 66

Query: 189 INNS 200
           ++NS
Sbjct: 67  LDNS 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,630
Number of Sequences: 27780
Number of extensions: 179625
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)