Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1046X
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 150 MFRSIFILYFLPLINNS 200
           MF+ +F L  L L NNS
Sbjct: 354 MFKDLFFLQILDLRNNS 370


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 330 IVVLMFM*SVVSYRMI 377
           IV+L+F   +VSY M+
Sbjct: 4   IVILLFTLCIVSYMMV 19


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -3

Query: 377 YHSIRYNTSHKHQNNYLSST*NLLKMFILKYVXXXXXXLISTANF 243
           Y++   N ++ + NNY ++   L K +I+          +   NF
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -3

Query: 377 YHSIRYNTSHKHQNNYLSST*NLLKMFILKYVXXXXXXLISTANF 243
           Y++   N ++ + NNY ++   L K +I+          +   NF
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,279
Number of Sequences: 438
Number of extensions: 2318
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)