Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1046X
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22890.3 68417.m03307 expressed protein                             28   4.0  
At4g22890.2 68417.m03306 expressed protein                             28   4.0  
At4g22890.1 68417.m03305 expressed protein                             28   4.0  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    27   5.3  

>At4g22890.3 68417.m03307 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 67  TLISLSSGMENSTLKFTNCYT 5
           T++S+SSG + +T+K TNC T
Sbjct: 285 TILSISSGGKTNTVKCTNCGT 305


>At4g22890.2 68417.m03306 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 67  TLISLSSGMENSTLKFTNCYT 5
           T++S+SSG + +T+K TNC T
Sbjct: 285 TILSISSGGKTNTVKCTNCGT 305


>At4g22890.1 68417.m03305 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 67  TLISLSSGMENSTLKFTNCYT 5
           T++S+SSG + +T+K TNC T
Sbjct: 285 TILSISSGGKTNTVKCTNCGT 305


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 432 RECGAEGPNTVCVHIALTISFYKIQHF 352
           RE G + P+T+  +  L++ +Y++QHF
Sbjct: 872 RELGLDHPDTMKSYGDLSVFYYRLQHF 898


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,117
Number of Sequences: 28952
Number of extensions: 152300
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)